Rpairix-0.3.7

Fixed issue where autoflip causes segmentation fault or returns an empty result on some systems. This affects the px_query() function with the autoflip=TRUE option.

Rpairix-0.3.6

• Index structure is consistent with pairix/pypairix 0.3.6. This new structure resolves integer overflow issues for linecount. the older indices can be read and used otherwise. (backward-compatible)

Rpairix-0.3.5

• Index structure and C source codes are consistent with pairix/pypairix 0.3.5. This new structure can deal with large chromosomes (>length 2^29). The older index can be read and used for regular chromosomes (<2^29) (backward-compatible).

Rpairix-0.2.5

• Index structure and C source codes are consistent with pairix/pypairix 0.2.5 (please re-index if your index was built by an older version of pairix/pypairix/Rpairix)
• px_build_index function now has parameter region_split_character (default: '|'). Query must use the same region_split_character used for building the index.

Rpairix-0.2.4

Total linecount is now added to the index and you can get the line count as below.

px_get_linecount(<input.gz>)
Index structure has changed - please re-index!

Note: 0.2.3 is deprecated to prevent confusion since it does not have a good error handling when used on an index built with a previous version and potentially cause infinite memory leak.

Rpairix-0.1.7

samples re-indexed according to pairix/pypairix 0.1.7

Rpairix-0.1.6

New index that is consistent with pairix/pypairix 0.1.7

Rpairix-0.1.5

Merge branch 'master' of github.com:4dn-dcic/Rpairix

Rpairix-0.1.3

Merge pull request #18 from 4dn-dcic/dev

Dev

Rpairix-0.1.2

Merge pull request #17 from 4dn-dcic/dev

Dev