v2.2

multi-allelic VCFs and utmos --af selection now weighs by max alt AF at a site instead of the AF of GT==1

Full Changelog: v2.1.0...v2.2

Utmos v2.1.0

• Performance improvements - lower memory and shorter runtime
• --no-singleton simple filter flag during conversion
• Code cleaning

v2.0.0

• AF is now pulled into utmos conversion by default
• select --lowmem now works with hdf5
• Previously concatenated hdf5 can serve as a single input
• Code fully tested in production on ~550K variants and ~100K samples. Selection took ~3 hours.

Full Changelog: v1.1.0...v2.0.0

v1.0.0

• Implemented --mode with topN and random options.
• Conversions outputs are now different, so they're not backwards compatible
• Adding --subset parameter

Full Changelog: v0.1.4...v1.0.0

v0.1.4

Smaller conversion output, tiny bit faster, allele frequency fix
Full Changelog: v0.1.3...v0.1.4

v0.1.3

Adding test/pylint coverage and fixing bugs exposed by tests

Full Changelog: v0.1.2...v0.1.3

v0.1.2

• include/exclude bug fixes
• sample safety check bug fix

Full Changelog: v0.1.1...v0.1.2

v0.1.1

Fixed AF bug and edge case of variants running out early

v0.1.0

Initial release of utmos.
Install with python3 -m pip install Utmos-0.1.0.tar.gz