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Update submodules #693

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merged 7 commits into from
Sep 20, 2023
Merged

Update submodules #693

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aa66d99
Update submodules. Remove GoogleTest submodule.
jrood-nrel Sep 19, 2023
757dc45
Remove rocm-libs from apt-get.
jrood-nrel Sep 19, 2023
72db9c4
Pin HIP version.
jrood-nrel Sep 19, 2023
ad20024
Update PelePhysics to use a temporary branch.
jrood-nrel Sep 20, 2023
defc8c1
Update PelePhysics.
jrood-nrel Sep 20, 2023
b446209
Update PelePhysics.
jrood-nrel Sep 20, 2023
38cf7bd
Update PelePhysics.
jrood-nrel Sep 20, 2023
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18 changes: 9 additions & 9 deletions .github/workflows/ci.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -74,7 +74,7 @@ jobs:
working-directory: ./Exec/RegTests/PMF
run: |
egrep "warning:|error:" build-output.txt \
| egrep -v "Submodules/AMReX|Submodules/sundials|Submodules/GoogleTest|GNUmakefile" \
| egrep -v "Submodules/AMReX|Submodules/sundials|GNUmakefile" \
| egrep -v "ld: warning:" | sort | uniq \
| awk 'BEGIN{i=0}{print $0}{i++}END{print "Warnings: "i}' > warnings.txt
cat warnings.txt
Expand All @@ -99,7 +99,7 @@ jobs:
working-directory: ./Exec/RegTests/EB-C10
run: |
egrep "warning:|error:" build-output.txt \
| egrep -v "Submodules/AMReX|Submodules/sundials|Submodules/GoogleTest|GNUmakefile" \
| egrep -v "Submodules/AMReX|Submodules/sundials|GNUmakefile" \
| egrep -v "ld: warning:" | sort | uniq \
| awk 'BEGIN{i=0}{print $0}{i++}END{print "Warnings: "i}' > warnings.txt
cat warnings.txt
Expand All @@ -124,7 +124,7 @@ jobs:
working-directory: ./Exec/RegTests/TG
run: |
egrep "warning:|error:" build-output.txt \
| egrep -v "Submodules/AMReX|Submodules/sundials|Submodules/GoogleTest|GNUmakefile" \
| egrep -v "Submodules/AMReX|Submodules/sundials|GNUmakefile" \
| egrep -v "ld: warning:" | sort | uniq \
| awk 'BEGIN{i=0}{print $0}{i++}END{print "Warnings: "i}' > warnings.txt
cat warnings.txt
Expand All @@ -146,7 +146,7 @@ jobs:
working-directory: ./Exec/RegTests/Soot-Flame
run: |
egrep "warning:|error:" build-output.txt \
| egrep -v "Submodules/AMReX|Submodules/sundials|Submodules/GoogleTest|GNUmakefile|Submodules/PeleMP" \
| egrep -v "Submodules/AMReX|Submodules/sundials|GNUmakefile|Submodules/PeleMP" \
| egrep -v "Submodules/PelePhysics/Support/Mechanism/Models" | sort | uniq \
| awk 'BEGIN{i=0}{print $0}{i++}END{print "Warnings: "i}' > warnings.txt
cat warnings.txt
Expand All @@ -168,7 +168,7 @@ jobs:
working-directory: ./Exec/RegTests/Spray-Conv
run: |
egrep "warning:|error:" build-output.txt \
| egrep -v "Submodules/AMReX|Submodules/sundials|Submodules/GoogleTest|GNUmakefile|Submodules/PeleMP" \
| egrep -v "Submodules/AMReX|Submodules/sundials|GNUmakefile|Submodules/PeleMP" \
| egrep -v "Submodules/PelePhysics/Support/Mechanism/Models" | sort | uniq \
| awk 'BEGIN{i=0}{print $0}{i++}END{print "Warnings: "i}' > warnings.txt
cat warnings.txt
Expand Down Expand Up @@ -293,7 +293,7 @@ jobs:
run: |
echo "::add-matcher::.github/problem-matchers/gcc.json"
egrep "warning:|error:" ${{runner.workspace}}/build-output.txt \
| egrep -v "Submodules/AMReX|Submodules/sundials|Submodules/GoogleTest" \
| egrep -v "Submodules/AMReX|Submodules/sundials" \
| egrep -v "ld: warning:" | egrep -v "lto-wrapper: warning:" | sort | uniq \
| awk 'BEGIN{i=0}{print $0}{i++}END{print "Warnings: "i}' > ${{runner.workspace}}/build-output-warnings.txt
cat ${{runner.workspace}}/build-output-warnings.txt
Expand Down Expand Up @@ -394,12 +394,12 @@ jobs:
run: |
curl -O https://repo.radeon.com/rocm/rocm.gpg.key
sudo apt-key add rocm.gpg.key
echo 'deb [arch=amd64] https://repo.radeon.com/rocm/apt/debian/ ubuntu main' \
echo 'deb [arch=amd64] https://repo.radeon.com/rocm/apt/5.6.1 ubuntu main' \
| sudo tee /etc/apt/sources.list.d/rocm.list
echo 'export PATH=/opt/rocm/llvm/bin:/opt/rocm/bin:/opt/rocm/profiler/bin:/opt/rocm/opencl/bin:$PATH' \
| sudo tee -a /etc/profile.d/rocm.sh
sudo apt-get update
sudo apt-get install -y rocm-dev roctracer-dev rocprofiler-dev rocrand-dev rocprim-dev rocm-libs
sudo apt-get install -y rocm-dev rocrand-dev rocprim-dev
- name: Install Ccache
run: |
wget https://github.com/ccache/ccache/releases/download/v4.8/ccache-4.8-linux-x86_64.tar.xz
Expand Down Expand Up @@ -570,7 +570,7 @@ jobs:
#set -eu -o pipefail
cmake --build . --parallel ${{env.NPROCS}} 2>&1 | tee -a clang-tidy-full-report.txt
egrep "warning:|error:" clang-tidy-full-report.txt \
| egrep -v "Submodules/AMReX|Submodules/sundials|Submodules/GoogleTest" \
| egrep -v "Submodules/AMReX|Submodules/sundials" \
| egrep -v "ld: warning:" | sort | uniq \
| awk 'BEGIN{i=0}{print $0}{i++}END{print "Warnings: "i}' > clang-tidy-warnings.txt
- name: Full report
Expand Down
2 changes: 1 addition & 1 deletion Submodules/AMReX
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Submodule AMReX updated 27 files
+4 −4 .github/workflows/cuda.yml
+1 −1 CITATION
+29 −5 Src/Base/AMReX_FabArrayUtility.H
+1 −3 Src/Base/AMReX_NFiles.cpp
+15 −0 Src/Base/AMReX_ParmParse.cpp
+7 −0 Src/Base/AMReX_Reduce.H
+2 −0 Src/EB/AMReX_EB2_Level.H
+1 −7 Src/EB/AMReX_EB2_Level.cpp
+5 −0 Src/EB/AMReX_EBCellFlag.H
+15 −0 Src/EB/AMReX_EBCellFlag.cpp
+3 −0 Src/EB/AMReX_EBDataCollection.H
+160 −1 Src/EB/AMReX_EBDataCollection.cpp
+10 −8 Src/EB/AMReX_EB_RedistributionApply.cpp
+41 −39 Src/EB/AMReX_EB_StateRedistUtils.cpp
+52 −0 Src/Extern/HYPRE/AMReX_HypreSolver.H
+131 −2 Src/Extern/SUNDIALS/AMReX_SundialsIntegrator.H
+41 −5 Src/F_Interfaces/AmrCore/AMReX_fillpatch_fi.cpp
+178 −32 Src/F_Interfaces/AmrCore/AMReX_fillpatch_mod.F90
+6 −4 Src/Particle/AMReX_ParIter.H
+1 −1 Src/Particle/AMReX_ParticleContainer.H
+14 −12 Src/Particle/AMReX_ParticleContainerI.H
+6 −10 Src/Particle/AMReX_ParticleUtil.H
+4 −4 Tests/LinearSolvers/Hypre/MyTest.cpp
+1 −1 Tools/GNUMake/comps/ibm.mak
+1 −1 Tools/GNUMake/comps/nvcc.mak
+3 −1 Tools/GNUMake/comps/nvhpc.mak
+3 −1 Tools/GNUMake/comps/pgi.mak
1 change: 0 additions & 1 deletion Submodules/GoogleTest
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Submodule GoogleTest deleted from 6c58c1
2 changes: 1 addition & 1 deletion Submodules/PelePhysics
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Submodule PelePhysics updated 29 files
+2 −2 .github/workflows/ci.yml
+2 −8 .github/workflows/dependencies/dependencies_hip.sh
+0 −236 CMakeLists.txt
+0 −20 Eos/CMakeLists.txt
+0 −29 Reactions/CMakeLists.txt
+0 −9 Source/CMakeLists.txt
+0 −7 Support/Mechanism/CMakeLists.txt
+0 −3 Support/Mechanism/Models/JL4/README.md
+3,410 −0 Support/Mechanism/Models/JL4/mechanism.H
+27 −33 Support/Mechanism/Models/JL4/mechanism.cpp
+2 −2 Support/Mechanism/Models/JL4/mechanism.yaml
+0 −3 Support/Mechanism/Models/chem-CH4-2step/README.md
+2,992 −0 Support/Mechanism/Models/chem-CH4-2step/mechanism.H
+27 −33 Support/Mechanism/Models/chem-CH4-2step/mechanism.cpp
+2 −2 Support/Mechanism/Models/chem-CH4-2step/mechanism.yaml
+2 −2 Support/Mechanism/Models/list_mech
+61 −24 Support/ceptr/ceptr/jacobian.py
+13 −3 Support/ceptr/ceptr/production.py
+8 −2 Support/ceptr/ceptr/qssa_converter.py
+21 −9 Support/ceptr/ceptr/utilities.py
+0 −23 Transport/CMakeLists.txt
+0 −15 Utility/Diagnostics/CMakeLists.txt
+54 −41 Utility/Diagnostics/DiagConditional.cpp
+10 −7 Utility/Diagnostics/DiagPDF.cpp
+0 −8 Utility/PMF/CMakeLists.txt
+1 −1 Utility/PMF/PMF.H
+5 −10 Utility/PMF/PMFData.cpp
+0 −8 Utility/PltFileManager/CMakeLists.txt
+0 −7 Utility/TurbInflow/CMakeLists.txt
2 changes: 1 addition & 1 deletion Submodules/sundials
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Submodule sundials updated 429 files
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