conda instead of mamba #334
Workflow file for this run
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| name: Test and deploy code | |
| on: [push] | |
| jobs: | |
| test: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ | |
| "ubuntu-latest", | |
| # "macos-latest", | |
| "macos-13", | |
| "windows-2019", | |
| ] | |
| python-version: ["3.9", "3.10", "3.11", "3.12"] | |
| defaults: # Needed for conda | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| lfs: true | |
| submodules: true | |
| - uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| channels: acellera,conda-forge,defaults | |
| - name: Install Linux HTMD conda deps | |
| if: matrix.os != 'windows-2019' | |
| run: | | |
| conda install --file package/htmd/DEPENDENCIES python=${{ matrix.python-version }} -y | |
| - name: Install Windows HTMD conda deps | |
| if: matrix.os == 'windows-2019' | |
| run: | | |
| conda install --file package/htmd/DEPENDENCIES_WIN python=${{ matrix.python-version }} -y | |
| - name: List installed packages | |
| run: conda list | |
| - name: Install pip dependencies | |
| run: | | |
| pip install flake8 pytest | |
| pip install . | |
| - name: Lint with flake8 | |
| run: | | |
| # stop the build if there are Python syntax errors or undefined names | |
| flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
| # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
| flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
| - name: Test | |
| run: | | |
| export HTMD_NONINTERACTIVE=1 | |
| pytest --verbose --durations=10 ./htmd/ | |
| deploy: | |
| if: startsWith(github.event.ref, 'refs/tags/') | |
| needs: test | |
| runs-on: ${{ matrix.os }} | |
| defaults: # Needed for conda | |
| run: | |
| shell: bash -l {0} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: ["ubuntu-latest", "windows-2019", "macos-13"] | |
| python-version: ["3.10"] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| activate-environment: test | |
| python-version: ${{ matrix.python-version }} | |
| channels: acellera,conda-forge,defaults | |
| - name: Dump Linux dependencies yaml file | |
| if: matrix.os != 'windows-2019' | |
| run: | | |
| pip install versioneer==0.28 | |
| python package/htmd/insert_placeholder_values.py package/htmd/DEPENDENCIES | |
| - name: Dump Windows dependencies yaml file | |
| if: matrix.os == 'windows-2019' | |
| run: | | |
| pip install versioneer==0.28 | |
| python package/htmd/insert_placeholder_values.py package/htmd/DEPENDENCIES_WIN | |
| - name: Build htmd conda package | |
| run: | | |
| conda install anaconda-client rattler-build python=${{ matrix.python-version }} | |
| rattler-build build --recipe ./package/htmd/recipe.yaml --output-dir /tmp/pkg/ --no-include-recipe -c acellera -c conda-forge | |
| - name: Upload to conda | |
| run: | | |
| anaconda -t ${{ secrets.ANACONDA_TOKEN_BASIC }} upload -u acellera ./pkg/noarch/htmd-*.conda |