fixed CI #336
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name: Test and deploy code | |
on: [push] | |
jobs: | |
test: | |
runs-on: ${{ matrix.os }} | |
strategy: | |
fail-fast: false | |
matrix: | |
os: [ | |
"ubuntu-latest", | |
# "macos-latest", | |
"macos-13", | |
"windows-2019", | |
] | |
python-version: ["3.9", "3.10", "3.11", "3.12"] | |
defaults: # Needed for conda | |
run: | |
shell: bash -l {0} | |
steps: | |
- uses: actions/checkout@v4 | |
with: | |
lfs: true | |
submodules: true | |
- uses: conda-incubator/setup-miniconda@v3 | |
with: | |
python-version: ${{ matrix.python-version }} | |
channels: acellera,conda-forge,defaults | |
- name: Install Linux HTMD conda deps | |
if: matrix.os != 'windows-2019' | |
run: | | |
conda install --file package/htmd/DEPENDENCIES python=${{ matrix.python-version }} -y | |
- name: Install Windows HTMD conda deps | |
if: matrix.os == 'windows-2019' | |
run: | | |
conda install --file package/htmd/DEPENDENCIES_WIN python=${{ matrix.python-version }} -y | |
- name: List installed packages | |
run: conda list | |
- name: Install pip dependencies | |
run: | | |
pip install flake8 pytest | |
pip install . | |
- name: Lint with flake8 | |
run: | | |
# stop the build if there are Python syntax errors or undefined names | |
flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
- name: Test | |
run: | | |
export HTMD_NONINTERACTIVE=1 | |
pytest --verbose --durations=10 ./htmd/ | |
deploy: | |
if: startsWith(github.event.ref, 'refs/tags/') | |
needs: test | |
runs-on: ${{ matrix.os }} | |
defaults: # Needed for conda | |
run: | |
shell: bash -l {0} | |
strategy: | |
fail-fast: false | |
matrix: | |
os: ["ubuntu-latest", "windows-2019", "macos-13"] | |
python-version: ["3.10"] | |
steps: | |
- uses: actions/checkout@v4 | |
- uses: conda-incubator/setup-miniconda@v3 | |
with: | |
activate-environment: test | |
python-version: ${{ matrix.python-version }} | |
channels: acellera,conda-forge,defaults | |
- name: Dump Linux dependencies yaml file | |
if: matrix.os != 'windows-2019' | |
run: | | |
pip install versioneer==0.28 pyyaml | |
python package/htmd/insert_placeholder_values.py package/htmd/DEPENDENCIES | |
- name: Dump Windows dependencies yaml file | |
if: matrix.os == 'windows-2019' | |
run: | | |
pip install versioneer==0.28 pyyaml | |
python package/htmd/insert_placeholder_values.py package/htmd/DEPENDENCIES_WIN | |
- name: Build htmd conda package | |
run: | | |
conda install anaconda-client rattler-build python=${{ matrix.python-version }} | |
rattler-build build --recipe ./package/htmd/recipe.yaml --output-dir /tmp/pkg/ --no-include-recipe -c acellera -c conda-forge | |
- name: Upload to conda | |
run: | | |
anaconda -t ${{ secrets.ANACONDA_TOKEN_BASIC }} upload -u acellera ./pkg/*/htmd-*.conda |