Fix filename in snakemake

AlexsLemonade · Jan 24, 2020 · 710f51a · 710f51a
1 parent e44262d
commit 710f51a
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/analyses/copy_number_consensus_call/Snakefile b/analyses/copy_number_consensus_call/Snakefile
@@ -317,7 +317,7 @@ rule make_segfile:
         script= os.path.join(config["scripts"], "bed_to_segfile.R"),
         consensus = "results/cnv_consensus.tsv",
         neutral = "results/cnv_neutral.bed",
-        uncalled = "results/cnv_consensus.tsv"
+        uncalled = "results/uncalled_samples.tsv"
     output:
         "results/pbta-cnv-consensus.seg"
     shell: