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TCGA Mutect2 and Strelka2 file appear to be identical? #483
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I deleted the files and their redirects and re-ran
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@yuankunzhu @tkoganti @migbro - can you look into this? |
In Terminal, |
@cansavvy i think we might have merged the same content for those two files. @tkoganti is checking and re-do it now. But a quick
that would explain the md5 difference, but with exactly same mutation content. sorry for the confusion, we will fix this in a new release. |
Hi @cansavvy I used strelka files for mutect by mistake. Sorry about that. I uploaded new strelka and mutect2 under V14 folder here - mutect2 file is 3.3Mb and strelka is 8.4Mb (file size for new maf.gz files ) |
@tkoganti , this seems to be telling me I don't have access to the link you posted? |
Also, the files before were 8.8Mb, but now neither file is that size? |
Both the new and old files have a file size of 8.4 Mb (8,805,610 bytes, it was showing as 8.4M when I looked at the files using ls -lh) I did not realize you did not have access to cavatica. These files are in a staging area currently and we will let you know when they are released. |
@jharenza - See below for file sizes - new and old strelka gzipped maf files - ~8.4M |
closed via #507 |
What data file(s) does this issue pertain to?
pbta-tcga-snv-mutect2.vep.maf.gz
andpbta-tcga-snv-strelka2.vep.maf.gz
What release are you using?
release-v13-20200116
Put your question or report your issue here.
Both have exactly 38296 number of mutation calls (number of rows) and the following prints out
TRUE
:Is there something I'm missing? Or did these file accidentally get mixed up?
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