PBTA Histologies v19 Part 6 of N: Update gsea

[kgaonkar6]

Purpose/implementation Section

What scientific question is your analysis addressing?

Re-running gene-set-enrichment-analysis for v19

Module	Reason	Brief Description	output
gene-set-enrichment-analysis	BS_JXF8A2A6 is removed as per #862	Updated gene set enrichment analysis with appropriate RNA-seq expression data	results/gsva_scores_stranded.tsv results/gsva_scores_polya.tsv for stranded, polya expression data respectively

What was your approach?

Just re-run as part of the scripts/run-for-subtyping.sh in kgaonkar6:v19-release in #1028
Then create a new branch for module specific review:
git checkout v19-release analyses/gene-set-enrichment-analysis

What GitHub issue does your pull request address?

#867

Directions for reviewers. Tell potential reviewers what kind of feedback you are soliciting.

Which areas should receive a particularly close look?

NA

Is there anything that you want to discuss further?

NA

Is the analysis in a mature enough form that the resulting figure(s) and/or table(s) are ready for review?

yes

Results

What types of results are included (e.g., table, figure)?

tables

What is your summary of the results?

Reproducibility Checklist

• The dependencies required to run the code in this pull request have been added to the project Dockerfile.
• This analysis has been added to continuous integration.

Documentation Checklist

• This analysis module has a README and it is up to date.
• This analysis is recorded in the table in analyses/README.md and the entry is up to date.
• The analytical code is documented and contains comments.

[jashapiro]

Small numeric changes only, looks good!