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Checkout bed_to_segfile.R changes from #987 #1064
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@kgaonkar6, the branch for #987 was doing strange things for me locally and it seems like you're having trouble as well. Here's the steps I took to pull out just the R code changes (I have a local copy of the branch from #987
cnv-consensus-update)mastercalledjaclyn-taroni/freec-neutral-najaclyn-taroni/freec-neutral-nagit checkout cnv-consensus-update analyses/copy_number_consensus_call/scripts/bed_to_segfile.RWe can close this but I wanted to illustrate that it worked as expected!