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change to kf-openaccess-us-east-1-prd-pbta/data #1121
change to kf-openaccess-us-east-1-prd-pbta/data #1121
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LGTM!
It seems like the code errors because the test cnv consensus data only has 1 row for BS_20TBZG09 which I tried to fix it with a273dcc
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The tests currently pass and there are no changes, outside of those to the download data step, to the CircleCI config file? |
In addition to download data and circleCI config file, an update to |
Yes, I saw that. I guess my point is that you didn't just try to solve the problem, you successfully solved the problem and that doesn't preclude merging this! |
Sorry for the confusion, I only added the While rerunning the chromothripsis module I am erroring out in another place which I am still trying to figure out :
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Assistance from Chromothripsis Analysis authors @LauraEgolf @yangyangclover will be helpful, I couldn't figured out why the sample |
@kgaonkar6 is this a problem with this pull request, the CI files, or a separate issue that comes up when running the entire pipeline (e.g., not using tested files)? I am confused. |
The Now I am trying to run the
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Does the output of that script go into the release or is it required for subtyping? If not, then it doesn’t preclude release in my opinion and we should file an issue that is separate from the release process. |
Ok sounds good, thanks for clarifying! The outputs from |
Purpose/implementation Section
What scientific question is your analysis addressing?
v20 CI testing files check
What was your approach?
Changed the s3 bucket path to https://s3.amazonaws.com/kf-openaccess-us-east-1-prd-pbta/data and copied testing_v20.zip files to
testing
folderWhat GitHub issue does your pull request address?
#1048
Directions for reviewers. Tell potential reviewers what kind of feedback you are soliciting.
Which areas should receive a particularly close look?
Add Shatterseek errored out here e6028f7
so I commented it out to run CI.
Will try to fix below