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V8 Release #223

Merged
merged 2 commits into from
Nov 4, 2019
Merged

V8 Release #223

merged 2 commits into from
Nov 4, 2019

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yuankunzhu
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Purpose/implementation

data release updates for v8

  • changes:
    • Updated clinical file
      • fixed error in primary_site: #214
    • Updated ControlFreeC TSV file
      • added tumor_ploidy and updated genotype to segment_genotype: PR comment
    • Updated RNA-Seq FPKM merge files
      • fixed ID merge error: #221

Issue/Caveats

Directions for reviewers

changed on release notes and download script.

  • file content updated for (added ControlFreeC ploidy and molecular_subtype)
    • pbta-histologies.tsv
    • pbta-gene-counts-rsem-expected_count.polya.rds
    • pbta-gene-counts-rsem-expected_count.stranded.rds
    • pbta-gene-expression-rsem-fpkm.polya.rds
    • pbta-gene-expression-rsem-fpkm.stranded.rds
    • pbta-cnv-controlfreec.tsv.gz

Results

Docker and continuous integration

@jharenza jharenza self-requested a review November 4, 2019 18:33
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@jharenza jharenza left a comment

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approve as long as CI check passes

@jharenza jharenza merged commit 3f1819d into AlexsLemonade:master Nov 4, 2019
jaclyn-taroni added a commit that referenced this pull request Nov 4, 2019
This reverts commit 3f1819d.
@jaclyn-taroni jaclyn-taroni mentioned this pull request Nov 4, 2019
@yuankunzhu yuankunzhu deleted the release/v8 branch November 5, 2019 14:16
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2 participants