Skip to content
This repository has been archived by the owner on Jun 21, 2023. It is now read-only.

CN Status Heatmap (PR 2 of 2) #603

Merged
merged 82 commits into from
May 15, 2020
Merged

CN Status Heatmap (PR 2 of 2) #603

merged 82 commits into from
May 15, 2020

Commits on Mar 3, 2020

  1. The basic set up is there. Needs more work

    @cansavvy
    cansavvy committed Mar 3, 2020
    Configuration menu
    Copy the full SHA
    97da925 View commit details
    Browse the repository at this point in the history

Commits on Mar 4, 2020

  1. Push this version of the heatmap though its gonna change

    @cansavvy
    cansavvy committed Mar 4, 2020
    Configuration menu
    Copy the full SHA
    73b6292 View commit details
    Browse the repository at this point in the history

  2. Sort of working

    @cansavvy
    cansavvy committed Mar 4, 2020
    Configuration menu
    Copy the full SHA
    99bd2d5 View commit details
    Browse the repository at this point in the history

  3. Merge remote-tracking branch 'origin/cn-status-heatmap' into cn-statu… 

    …s-heatmap
    @cansavvy
    cansavvy committed Mar 4, 2020
    Configuration menu
    Copy the full SHA
    29aa5d9 View commit details
    Browse the repository at this point in the history

  4. Neatened up things

    @cansavvy
    cansavvy committed Mar 4, 2020
    Configuration menu
    Copy the full SHA
    f441b27 View commit details
    Browse the repository at this point in the history

  5. Sorted out a few error handling items

    @cansavvy
    cansavvy committed Mar 4, 2020
    Configuration menu
    Copy the full SHA
    dd63b5f View commit details
    Browse the repository at this point in the history

  6. Almost there

    @cansavvy
    cansavvy committed Mar 4, 2020
    Configuration menu
    Copy the full SHA
    574a75e View commit details
    Browse the repository at this point in the history

  7. It's working. Needs more documentation and tweaks

    @cansavvy
    cansavvy committed Mar 4, 2020
    Configuration menu
    Copy the full SHA
    f16075a View commit details
    Browse the repository at this point in the history

  8. documentation!!

    @cansavvy
    cansavvy committed Mar 4, 2020
    Configuration menu
    Copy the full SHA
    73c9c7d View commit details
    Browse the repository at this point in the history

  9. Organize and make functions in their own util folder

    @cansavvy
    cansavvy committed Mar 4, 2020
    Configuration menu
    Copy the full SHA
    ebba0d7 View commit details
    Browse the repository at this point in the history

  10. Add length filter and fix error

    @cansavvy
    cansavvy committed Mar 4, 2020
    Configuration menu
    Copy the full SHA
    0b1219c View commit details
    Browse the repository at this point in the history

  11. Merge branch 'cn-status-heatmap-1' into cn-status-heatmap

    @cansavvy
    cansavvy committed Mar 4, 2020
    Configuration menu
    Copy the full SHA
    1791b6d View commit details
    Browse the repository at this point in the history

  12. Refreshy the notebook

    @cansavvy
    cansavvy committed Mar 4, 2020
    Configuration menu
    Copy the full SHA
    cf93927 View commit details
    Browse the repository at this point in the history

  13. Merge branch 'cn-status-heatmap' into cn-status-heatmap-1

    @cansavvy
    cansavvy committed Mar 4, 2020
    Configuration menu
    Copy the full SHA
    9b71c3e View commit details
    Browse the repository at this point in the history

  14. Add to CircleCI

    @cansavvy
    cansavvy committed Mar 4, 2020
    Configuration menu
    Copy the full SHA
    6b69b8e View commit details
    Browse the repository at this point in the history

  15. Merge branch 'cn-status-heatmap' into cn-status-heatmap-1

    @cansavvy
    cansavvy committed Mar 4, 2020
    Configuration menu
    Copy the full SHA
    dfec47c View commit details
    Browse the repository at this point in the history

  16. Streamline the PR to functions and README

    @cansavvy
    cansavvy committed Mar 4, 2020
    Configuration menu
    Copy the full SHA
    2c9d4dd View commit details
    Browse the repository at this point in the history

  17. Minor updates to READMEs

    @cansavvy
    cansavvy committed Mar 4, 2020
    Configuration menu
    Copy the full SHA
    1a9b4dc View commit details
    Browse the repository at this point in the history

  18. Update some minor comments and etc.

    @cansavvy
    cansavvy committed Mar 4, 2020
    Configuration menu
    Copy the full SHA
    80ddd77 View commit details
    Browse the repository at this point in the history

  19. Merge branch 'master' into cn-status-heatmap-1

    @cansavvy
    cansavvy authored Mar 4, 2020
    Configuration menu
    Copy the full SHA
    9f0b086 View commit details
    Browse the repository at this point in the history

  20. Merge remote-tracking branch 'upstream/master' into cn-status-heatmap-1

    @cansavvy
    cansavvy committed Mar 4, 2020
    Configuration menu
    Copy the full SHA
    2709999 View commit details
    Browse the repository at this point in the history

  21. Merge remote-tracking branch 'origin/cn-status-heatmap-1' into cn-sta… 

    …tus-heatmap-1
    @cansavvy
    cansavvy committed Mar 4, 2020
    Configuration menu
    Copy the full SHA
    9927c61 View commit details
    Browse the repository at this point in the history

  22. Merge branch 'master' into cn-status-heatmap

    @cansavvy
    cansavvy authored Mar 4, 2020
    Configuration menu
    Copy the full SHA
    a34cddd View commit details
    Browse the repository at this point in the history

  23. extra space in config file

    @cansavvy
    cansavvy committed Mar 4, 2020
    Configuration menu
    Copy the full SHA
    691cb10 View commit details
    Browse the repository at this point in the history

  24. extra space in config file

    @cansavvy
    cansavvy committed Mar 4, 2020
    Configuration menu
    Copy the full SHA
    95693cc View commit details
    Browse the repository at this point in the history

  25. fix a minor error.

    @cansavvy
    cansavvy committed Mar 4, 2020
    Configuration menu
    Copy the full SHA
    09f166c View commit details
    Browse the repository at this point in the history

Commits on Mar 5, 2020

  1. Forgot this should not be in CI until next PR

    @cansavvy
    cansavvy committed Mar 5, 2020
    Configuration menu
    Copy the full SHA
    3c16dc7 View commit details
    Browse the repository at this point in the history

  2. refreshing notebook

    @cansavvy
    cansavvy committed Mar 5, 2020
    Configuration menu
    Copy the full SHA
    c735a62 View commit details
    Browse the repository at this point in the history

  3. Found some of the indexing problems I was having

    @cansavvy
    cansavvy committed Mar 5, 2020
    Configuration menu
    Copy the full SHA
    06333b0 View commit details
    Browse the repository at this point in the history

  4. Merge branch 'master' into cn-status-heatmap

    @cansavvy
    cansavvy authored Mar 5, 2020
    Configuration menu
    Copy the full SHA
    277848a View commit details
    Browse the repository at this point in the history

  5. Fix indices thing

    @cansavvy
    cansavvy authored Mar 5, 2020
    Configuration menu
    Copy the full SHA
    a12cc90 View commit details
    Browse the repository at this point in the history

  6. Merge branch 'master' into cn-status-heatmap-1

    @cansavvy
    cansavvy authored Mar 5, 2020
    Configuration menu
    Copy the full SHA
    ab541c7 View commit details
    Browse the repository at this point in the history

  7. Use 10Mb cutoff and refresh notebook

    @cansavvy
    cansavvy committed Mar 5, 2020
    Configuration menu
    Copy the full SHA
    4edf747 View commit details
    Browse the repository at this point in the history

  8. Merge remote-tracking branch 'origin/cn-status-heatmap' into cn-statu… 

    …s-heatmap
    @cansavvy
    cansavvy committed Mar 5, 2020
    Configuration menu
    Copy the full SHA
    9b41ca7 View commit details
    Browse the repository at this point in the history

  9. Edit some comments

    @cansavvy
    cansavvy committed Mar 5, 2020
    Configuration menu
    Copy the full SHA
    f95e4d8 View commit details
    Browse the repository at this point in the history

Commits on Mar 9, 2020

  1. Merge branch 'master' into cn-status-heatmap-1

    @cansavvy
    cansavvy authored Mar 9, 2020
    Configuration menu
    Copy the full SHA
    c6eb52b View commit details
    Browse the repository at this point in the history

  2. Merge branch 'master' into cn-status-heatmap

    @cansavvy
    cansavvy authored Mar 9, 2020
    Configuration menu
    Copy the full SHA
    48f209b View commit details
    Browse the repository at this point in the history

Commits on Mar 11, 2020

  1. Merge branch 'master' into cn-status-heatmap-1

    @cansavvy
    cansavvy authored Mar 11, 2020
    Configuration menu
    Copy the full SHA
    cd3cdd4 View commit details
    Browse the repository at this point in the history

  2. Merge branch 'master' into cn-status-heatmap

    @cansavvy
    cansavvy authored Mar 11, 2020
    Configuration menu
    Copy the full SHA
    0ed90e0 View commit details
    Browse the repository at this point in the history

Commits on Mar 19, 2020

  1. Merge branch 'master' into cn-status-heatmap

    @cansavvy
    cansavvy authored Mar 19, 2020
    Configuration menu
    Copy the full SHA
    69db550 View commit details
    Browse the repository at this point in the history

Commits on Mar 26, 2020

  1. Merge branch 'master' into cn-status-heatmap-1

    @jaclyn-taroni
    jaclyn-taroni authored Mar 26, 2020
    Configuration menu
    Copy the full SHA
    a5691d0 View commit details
    Browse the repository at this point in the history

Commits on Mar 27, 2020

  1. Merge branch 'master' into cn-status-heatmap-1

    @cansavvy
    cansavvy authored Mar 27, 2020
    Configuration menu
    Copy the full SHA
    0e737f2 View commit details
    Browse the repository at this point in the history

  2. Merge branch 'master' into cn-status-heatmap

    @cansavvy
    cansavvy authored Mar 27, 2020
    Configuration menu
    Copy the full SHA
    a2a2c7f View commit details
    Browse the repository at this point in the history

  3. Some typo fixes

    @cansavvy
    cansavvy committed Mar 27, 2020
    Configuration menu
    Copy the full SHA
    5eca2fb View commit details
    Browse the repository at this point in the history

  4. Update to unified color palette

    @cansavvy
    cansavvy committed Mar 27, 2020
    Configuration menu
    Copy the full SHA
    2e367bf View commit details
    Browse the repository at this point in the history

  5. Fix some of the annotation objs and refresh

    @cansavvy
    cansavvy committed Mar 27, 2020
    Configuration menu
    Copy the full SHA
    1a6b505 View commit details
    Browse the repository at this point in the history

Commits on Mar 30, 2020

  1. Merge branch 'master' into cn-status-heatmap-1

    @jaclyn-taroni
    jaclyn-taroni authored Mar 30, 2020
    Configuration menu
    Copy the full SHA
    6cf212f View commit details
    Browse the repository at this point in the history

Commits on Mar 31, 2020

  1. Incorporate @cbethell 's suggestions

    @cansavvy
    cansavvy committed Mar 31, 2020
    Configuration menu
    Copy the full SHA
    f74a4dd View commit details
    Browse the repository at this point in the history

  2. Merge branch 'master' into cn-status-heatmap-1

    @jaclyn-taroni
    jaclyn-taroni authored Mar 31, 2020
    Configuration menu
    Copy the full SHA
    f2b2fe7 View commit details
    Browse the repository at this point in the history

  3. Use @jaclyn-taroni 's wording suggestions

    @cansavvy
    cansavvy committed Mar 31, 2020
    Configuration menu
    Copy the full SHA
    53632a1 View commit details
    Browse the repository at this point in the history

  4. Merge branch 'master' into cn-status-heatmap-1

    @cansavvy
    cansavvy authored Mar 31, 2020
    Configuration menu
    Copy the full SHA
    cf8fa2b View commit details
    Browse the repository at this point in the history

Commits on Apr 1, 2020

  1. Incorporate @cbethell 's suggestions

    @cansavvy
    cansavvy committed Apr 1, 2020
    Configuration menu
    Copy the full SHA
    d16c1dc View commit details
    Browse the repository at this point in the history

  2. Add more details about bp_per_bin in the README

    @cansavvy
    cansavvy committed Apr 1, 2020
    Configuration menu
    Copy the full SHA
    05d2e82 View commit details
    Browse the repository at this point in the history

  3. Merge branch 'master' into cn-status-heatmap-1

    @cansavvy
    cansavvy authored Apr 1, 2020
    Configuration menu
    Copy the full SHA
    8216be9 View commit details
    Browse the repository at this point in the history

Commits on Apr 8, 2020

  1. Merge branch 'master' into cn-status-heatmap

    @cansavvy
    cansavvy authored Apr 8, 2020
    Configuration menu
    Copy the full SHA
    4922503 View commit details
    Browse the repository at this point in the history

  2. Incorporate @jashapiro suggestions

    @cansavvy
    cansavvy committed Apr 8, 2020
    Configuration menu
    Copy the full SHA
    4651676 View commit details
    Browse the repository at this point in the history

  3. Merge branch 'cn-status-heatmap-1' into cn-status-heatmap

    @cansavvy
    cansavvy committed Apr 8, 2020
    Configuration menu
    Copy the full SHA
    9258b57 View commit details
    Browse the repository at this point in the history

  4. Update CN heatmap with the other PR changes

    @cansavvy
    cansavvy committed Apr 8, 2020
    Configuration menu
    Copy the full SHA
    7ff5b10 View commit details
    Browse the repository at this point in the history

  5. Merge branch 'master' into cn-status-heatmap-1

    @cansavvy
    cansavvy authored Apr 8, 2020
    Configuration menu
    Copy the full SHA
    3e2df17 View commit details
    Browse the repository at this point in the history

  6. Reformat that last logic bit with the uncallables

    @cansavvy
    cansavvy committed Apr 8, 2020
    Configuration menu
    Copy the full SHA
    181d269 View commit details
    Browse the repository at this point in the history

  7. Refresh the notebook

    @cansavvy
    cansavvy committed Apr 8, 2020
    Configuration menu
    Copy the full SHA
    a4c249a View commit details
    Browse the repository at this point in the history

  8. Make updates to the logic and its handling of uncallables

    @cansavvy
    cansavvy committed Apr 8, 2020
    Configuration menu
    Copy the full SHA
    718e4e9 View commit details
    Browse the repository at this point in the history

  9. Forgot to take out development things.

    @cansavvy
    cansavvy committed Apr 8, 2020
    Configuration menu
    Copy the full SHA
    6e39d01 View commit details
    Browse the repository at this point in the history

  10. Get rid of dev thing and refresh the notebook

    @cansavvy
    cansavvy committed Apr 8, 2020
    Configuration menu
    Copy the full SHA
    a46e3bd View commit details
    Browse the repository at this point in the history

  11. Use @josh logic

    @cansavvy
    cansavvy committed Apr 8, 2020
    Configuration menu
    Copy the full SHA
    e4aa934 View commit details
    Browse the repository at this point in the history

Commits on Apr 10, 2020

  1. Comment updates

    @jashapiro
    jashapiro authored Apr 10, 2020
    Configuration menu
    Copy the full SHA
    f9f812a View commit details
    Browse the repository at this point in the history

  2. Merge branch 'cn-status-heatmap-1' into cn-status-heatmap

    @cansavvy
    cansavvy committed Apr 10, 2020
    Configuration menu
    Copy the full SHA
    43e9825 View commit details
    Browse the repository at this point in the history

  3. It's not right, but its less wrong: samples are in right order

    @cansavvy
    cansavvy committed Apr 10, 2020
    Configuration menu
    Copy the full SHA
    53fe78d View commit details
    Browse the repository at this point in the history

Commits on Apr 13, 2020

  1. Merge branch 'master' into cn-status-heatmap

    @cansavvy
    cansavvy authored Apr 13, 2020
    Configuration menu
    Copy the full SHA
    054a059 View commit details
    Browse the repository at this point in the history

  2. Resolve reordering error

    @cansavvy
    cansavvy committed Apr 13, 2020
    Configuration menu
    Copy the full SHA
    df23c14 View commit details
    Browse the repository at this point in the history

  3. Merge remote-tracking branch 'cansavvy/cn-status-heatmap' into cn-sta… 

    …tus-heatmap
    @cansavvy
    cansavvy committed Apr 13, 2020
    Configuration menu
    Copy the full SHA
    af29757 View commit details
    Browse the repository at this point in the history

  4. Switch logic so neutral is default.

    @cansavvy
    cansavvy committed Apr 13, 2020
    Configuration menu
    Copy the full SHA
    fe9b404 View commit details
    Browse the repository at this point in the history

Commits on Apr 20, 2020

  1. Incorporate @cbethell 's suggestions

    @cansavvy
    cansavvy committed Apr 20, 2020
    Configuration menu
    Copy the full SHA
    2321c24 View commit details
    Browse the repository at this point in the history

  2. Merge branch 'master' into cn-status-heatmap

    @cansavvy
    cansavvy authored Apr 20, 2020
    Configuration menu
    Copy the full SHA
    43fbcd1 View commit details
    Browse the repository at this point in the history

Commits on May 12, 2020

  1. Heatmap legend is in right spot but not horizontal

    @cansavvy
    cansavvy committed May 12, 2020
    Configuration menu
    Copy the full SHA
    6fb86c9 View commit details
    Browse the repository at this point in the history

  2. Horizontal Legend!!!

    @cansavvy
    cansavvy committed May 12, 2020
    Configuration menu
    Copy the full SHA
    b999962 View commit details
    Browse the repository at this point in the history

Commits on May 14, 2020

  1. linter it

    @cansavvy
    cansavvy committed May 14, 2020
    Configuration menu
    Copy the full SHA
    9226a78 View commit details
    Browse the repository at this point in the history

Commits on May 15, 2020

  1. Merge branch 'master' into cn-status-heatmap

    @jashapiro
    jashapiro authored May 15, 2020
    Configuration menu
    Copy the full SHA
    7681562 View commit details
    Browse the repository at this point in the history

  2. Docs clarifications on thresholds and change chr back to original colors

    @cansavvy
    cansavvy committed May 15, 2020
    Configuration menu
    Copy the full SHA
    3d0172b View commit details
    Browse the repository at this point in the history

  3. Merge branch 'master' into cn-status-heatmap

    @cansavvy
    cansavvy authored May 15, 2020
    Configuration menu
    Copy the full SHA
    0ec01d5 View commit details
    Browse the repository at this point in the history

  4. Up the resolution

    @cansavvy
    cansavvy committed May 15, 2020
    Configuration menu
    Copy the full SHA
    d2051a2 View commit details
    Browse the repository at this point in the history

  5. Merge branch 'master' into cn-status-heatmap

    @jashapiro
    jashapiro authored May 15, 2020
    Configuration menu
    Copy the full SHA
    8bbc84c View commit details
    Browse the repository at this point in the history