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#790 Part1: adding new SNV subtypes for LGAT #842

Merged
merged 28 commits into from
Jan 10, 2021
Merged

#790 Part1: adding new SNV subtypes for LGAT #842

merged 28 commits into from
Jan 10, 2021

Commits on Nov 16, 2020

  1. adding new SNV subtypes for LGAT

    @kgaonkar6
    kgaonkar6 committed Nov 16, 2020
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  2. adding additional subtypes

    @kgaonkar6
    kgaonkar6 committed Nov 16, 2020
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  3. re-doing subtyping so removing the last step for now

    @kgaonkar6
    kgaonkar6 committed Nov 16, 2020
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  4. updating run_subtyping.sh

    @kgaonkar6
    kgaonkar6 committed Nov 16, 2020
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  5. removing subtyping list

    @kgaonkar6
    kgaonkar6 committed Nov 16, 2020
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Commits on Nov 17, 2020

  1. update README

    @kgaonkar6
    kgaonkar6 committed Nov 17, 2020
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  2. Merge branch 'master' into lgat_add_subtyping_SNV

    @kgaonkar6
    kgaonkar6 authored Nov 17, 2020
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Commits on Nov 19, 2020

  1. changed to nb

    @kgaonkar6
    kgaonkar6 committed Nov 19, 2020
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  2. Merge branch 'lgat_add_subtyping_SNV' of https://github.com/kgaonkar6… 

    …/OpenPBTA-analysis into lgat_add_subtyping_SNV
    @kgaonkar6
    kgaonkar6 committed Nov 19, 2020
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  3. remove Rscript

    @kgaonkar6
    kgaonkar6 committed Nov 19, 2020
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  4. Update README.md

    @kgaonkar6
    kgaonkar6 authored Nov 19, 2020
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  5. Update analyses/molecular-subtyping-LGAT/01-subset-files-for-LGAT.Rmd 

    Co-authored-by: Jo Lynne Rokita <jharenza@gmail.com>
    @kgaonkar6 @jharenza
    kgaonkar6 and jharenza authored Nov 19, 2020
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  6. Update analyses/molecular-subtyping-LGAT/01-subset-files-for-LGAT.Rmd 

    Co-authored-by: Jo Lynne Rokita <jharenza@gmail.com>
    @kgaonkar6 @jharenza
    kgaonkar6 and jharenza authored Nov 19, 2020
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  7. Update analyses/molecular-subtyping-LGAT/01-subset-files-for-LGAT.Rmd 

    Co-authored-by: Jo Lynne Rokita <jharenza@gmail.com>
    @kgaonkar6 @jharenza
    kgaonkar6 and jharenza authored Nov 19, 2020
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  8. adding comments remove silent snv

    @kgaonkar6
    kgaonkar6 committed Nov 19, 2020
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  9. adding sample_id

    @kgaonkar6
    kgaonkar6 committed Nov 19, 2020
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  10. adding H3F3B

    @kgaonkar6
    kgaonkar6 committed Nov 19, 2020
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  11. updates to files

    @kgaonkar6
    kgaonkar6 committed Nov 19, 2020
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  12. Merge branch 'master' into lgat_add_subtyping_SNV

    @kgaonkar6
    kgaonkar6 authored Nov 19, 2020
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Commits on Dec 2, 2020

  1. add HIST2H3C; update comments 

    - add HIST2H3C to JSON file
- update/shorten/space out some comments for clarity
- update paste0() to paste()
    jharenza committed Dec 2, 2020
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Commits on Dec 3, 2020

  1. edits to Rmd in bash, H2.3

    @kgaonkar6
    kgaonkar6 committed Dec 3, 2020
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Commits on Dec 4, 2020

  1. Update analyses/molecular-subtyping-LGAT/01-subset-files-for-LGAT.Rmd 

    fix typo
    @jharenza
    jharenza authored Dec 4, 2020
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  2. Merge branch 'lgat_add_subtyping_SNV' of https://github.com/kgaonkar6… 

    …/OpenPBTA-analysis into lgat_add_subtyping_SNV
    @kgaonkar6
    kgaonkar6 committed Dec 4, 2020
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  3. remove modifider/low

    @kgaonkar6
    kgaonkar6 committed Dec 4, 2020
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Commits on Dec 7, 2020

  1. Update analyses/molecular-subtyping-LGAT/01-subset-files-for-LGAT.Rmd 

    Co-authored-by: Jo Lynne Rokita <jharenza@gmail.com>
    @kgaonkar6 @jharenza
    kgaonkar6 and jharenza authored Dec 7, 2020
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Commits on Dec 9, 2020

  1. re-run with HIST2H3C

    @kgaonkar6
    kgaonkar6 committed Dec 9, 2020
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Commits on Jan 9, 2021

  1. Merge remote-tracking branch 'upstream/master' into lgat_add_subtypin… 

    …g_SNV
    @jaclyn-taroni
    jaclyn-taroni committed Jan 9, 2021
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Commits on Jan 10, 2021

  1. Merge branch 'master' into lgat_add_subtyping_SNV

    @jaclyn-taroni
    jaclyn-taroni authored Jan 10, 2021
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