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Part1 Freec as default : Cnv consensus update #987

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Part1 Freec as default : Cnv consensus update #987

wants to merge 40 commits into from

Commits on Apr 2, 2021

  1. add freec as default

    @kgaonkar6
    kgaonkar6 committed Apr 2, 2021
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Commits on Apr 6, 2021

  1. re-run

    @kgaonkar6
    kgaonkar6 committed Apr 6, 2021
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  2. Delete --configfile

    @kgaonkar6
    kgaonkar6 authored Apr 6, 2021
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  3. Delete --restart-times

    @kgaonkar6
    kgaonkar6 authored Apr 6, 2021
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  4. Delete -s

    @kgaonkar6
    kgaonkar6 authored Apr 6, 2021
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  5. Delete -j

    @kgaonkar6
    kgaonkar6 authored Apr 6, 2021
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  6. re-run with freec update

    @kgaonkar6
    kgaonkar6 committed Apr 6, 2021
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Commits on Apr 7, 2021

  1. re-run after mem fix

    @kgaonkar6
    kgaonkar6 committed Apr 7, 2021
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  2. updated with freec as deafult

    @kgaonkar6
    kgaonkar6 committed Apr 7, 2021
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  3. chrom plot update with freec default

    @kgaonkar6
    kgaonkar6 committed Apr 7, 2021
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  4. chrom plot per histology

    @kgaonkar6
    kgaonkar6 committed Apr 7, 2021
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Commits on Apr 19, 2021

  1. copynumber neutral 3

    @kgaonkar6
    kgaonkar6 committed Apr 19, 2021
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  2. Merge branch 'cnv-consensus-update' of https://github.com/kgaonkar6/O… 

    …penPBTA-analysis into cnv-consensus-update
    @kgaonkar6
    kgaonkar6 committed Apr 19, 2021
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  3. Merge branch 'cnv-consensus-update' of https://github.com/kgaonkar6/O… 

    …penPBTA-analysis into focal-cn-update
    @kgaonkar6
    kgaonkar6 committed Apr 19, 2021
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  4. rerun without 02,03

    @kgaonkar6
    kgaonkar6 committed Apr 19, 2021
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Commits on Apr 21, 2021

  1. neutral as NA

    Ubuntu committed Apr 21, 2021
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  2. Merge branch 'cnv-consensus-update' into focal-cn-update

    Ubuntu committed Apr 21, 2021
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Commits on Apr 22, 2021

  1. neutral as NA focal calls

    Ubuntu committed Apr 22, 2021
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  2. Merge branch 'master' into cnv-consensus-update

    @kgaonkar6
    kgaonkar6 authored Apr 22, 2021
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  3. Merge branch 'focal-cn-update' into oncoprint

    Ubuntu committed Apr 22, 2021
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  4. update oncoprint with neutral NA

    Ubuntu committed Apr 22, 2021
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  5. Merge branch 'oncoprint' into chrom_plot

    Ubuntu committed Apr 22, 2021
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  6. update neutral as NA

    Ubuntu committed Apr 22, 2021
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  7. remove change log

    @kgaonkar6
    kgaonkar6 committed Apr 22, 2021
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Commits on Apr 23, 2021

  1. Merge branch 'master' into cnv-consensus-update

    Jo Lynne Rokita authored Apr 23, 2021
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Commits on May 4, 2021

  1. Merge branch 'master' into cnv-consensus-update

    @kgaonkar6
    kgaonkar6 authored May 4, 2021
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Commits on May 5, 2021

  1. Merge branch 'master' into cnv-consensus-update

    @kgaonkar6
    kgaonkar6 authored May 5, 2021
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Commits on May 7, 2021

  1. Merge pull request #4 from kgaonkar6/chrom_plot 

    Part4 Freec as default: Chromosome wide CNV plots per histology
    @kgaonkar6
    kgaonkar6 authored May 7, 2021
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  2. Merge pull request #3 from kgaonkar6/oncoprint 

    Part3 Freec as default: Oncoprint update
    @kgaonkar6
    kgaonkar6 authored May 7, 2021
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  3. Merge pull request #2 from kgaonkar6/focal-cn-update 

    Part2 Freec as default: Cnv focal files update
    @kgaonkar6
    kgaonkar6 authored May 7, 2021
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  4. Merge branch 'master' into cnv-consensus-update

    @kgaonkar6
    kgaonkar6 authored May 7, 2021
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Commits on May 11, 2021

  1. Update README.md

    @kgaonkar6
    kgaonkar6 authored May 11, 2021
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  2. Update README.md

    @kgaonkar6
    kgaonkar6 authored May 11, 2021
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  3. Update README.md

    @kgaonkar6
    kgaonkar6 authored May 11, 2021
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  4. Merge branch 'master' into cnv-consensus-update

    Jo Lynne Rokita authored May 11, 2021
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  5. adding changes from AlexsLemonade#1009

    @kgaonkar6
    kgaonkar6 committed May 11, 2021
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  6. adding changes from AlexsLemonade#1009

    @kgaonkar6
    kgaonkar6 committed May 11, 2021
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  7. checkout master oncoprint-landscape

    @kgaonkar6
    kgaonkar6 committed May 11, 2021
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  8. Merge branch 'master' into cnv-consensus-update

    @kgaonkar6
    kgaonkar6 authored May 11, 2021
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  9. adding color_palette

    @kgaonkar6
    kgaonkar6 committed May 11, 2021
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