minor update to configs for local & batch

AlexsLemonade · Sep 10, 2024 · 5c5d0af · 5c5d0af
1 parent 76e1d69
commit 5c5d0af
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Showing 2 changed files with 2 additions and 4 deletions.
diff --git a/config/profile_batch.config b/config/profile_batch.config
@@ -5,7 +5,6 @@ docker.enabled = true
 wave.enabled = true
 fusion.enabled = true
 
-
 aws {
   batch{
     maxTransferAttempts = 3
@@ -14,10 +13,8 @@ aws {
   region = 'us-east-2'
 }
 
-
 process {
   executor = 'awsbatch'
-  scratch = false
   resourceLimits = [ cpus: 64, memory: 512.GB ]
   queue = 'openscpca-nf-batch-default-queue'
   // switch to the priority queue for known long running tasks if failing

diff --git a/nextflow.config b/nextflow.config
@@ -31,7 +31,8 @@ profiles {
       resourceLimits = [ cpus: 4, memory: 16.GB ]
     }
     docker.enabled = true
-    docker.userEmulation = true
+    docker.runOptions = '--platform linux/amd64'
+    wave.enabled = true
   }
   prod {
     params {