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Update merge publishDir #706

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merged 1 commit into from
Feb 27, 2024
Merged

Update merge publishDir #706

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6 changes: 3 additions & 3 deletions merge.nf
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Original file line number Diff line number Diff line change
Expand Up @@ -30,7 +30,7 @@ if(param_error){
process merge_sce {
container params.SCPCATOOLS_CONTAINER
label 'mem_32'
publishDir "${params.results_dir}/merged/${merge_group_id}"
publishDir "${params.results_dir}/${merge_group_id}/merged"
input:
tuple val(merge_group_id), val(has_adt), val(multiplexed), val(library_ids), path(scpca_nf_file)
output:
Expand Down Expand Up @@ -60,7 +60,7 @@ process merge_sce {
// create merge report
process generate_merge_report {
container params.SCPCATOOLS_CONTAINER
publishDir "${params.results_dir}/merged/${merge_group_id}"
publishDir "${params.results_dir}/${merge_group_id}/merged"
label 'mem_16'
input:
tuple path(merged_sce_file), val(merge_group_id), val(has_adt), val(multiplexed)
Expand Down Expand Up @@ -89,7 +89,7 @@ process export_anndata{
container params.SCPCATOOLS_CONTAINER
label 'mem_32'
tag "${merge_group_id}"
publishDir "${params.results_dir}/merged/${merge_group_id}", mode: 'copy'
publishDir "${params.results_dir}/${merge_group_id}/merged", mode: 'copy'
input:
tuple path(merged_sce_file), val(merge_group_id), val(has_adt)
output:
Expand Down
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