Reduce SCE file sizes #712
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This was referenced Mar 5, 2024
sjspielman
reviewed
Mar 5, 2024
| @@ -9,12 +9,12 @@ option_list <- list( | |||
| make_option( | |||
| opt_str = c("--input_library_ids"), | |||
| type = "character", | |||
| help = "Comma separated list of library IDs corresponding to the libraries being integrated." | |||
| ), | ||
| make_option( | ||
| opt_str = c("--input_sce_files"), | ||
| type = "character", | ||
| help = "Comma separated list of input sce file paths corresponding to the sces being integrated." |
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CLoses #710
Here I changed all compression of SCE RDS files from gzip to bz2, with the exception of merged files, which I left alone with their current faster but less efficient compression algorithm. (Noting also that the gzip there is already set for low compression, high speed)
I also removed the miQC model from the metadata of the processed data only, and from merged objects. I don't think it will be there in normal processing, but it seemed reasonable to remove in case we want to run the merge script on filtered data at some point.