Use mem_max for all merging and sync changes from main
#726
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…licate-code Remove duplicated code in cell type module
add autofix setting & update
for more information, see https://pre-commit.ci
…g-if-no-processed-cells Skip any additional processing to processed objects with 0 cells
Bump memory for CCDL only
Co-authored-by: Joshua Shapiro <josh.shapiro@ccdatalab.org>
…m-bump Add max_mem label for Cell Assign
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In preparation for #654, I'm adjusting the processes in the merging workflow to use
mem_max. I think we want to be able to adjust memory for all processes since after the merged object is created, we may need a lot of memory to read them back into R for the report and exporting AnnData objects.While I was here, I also prepped for #654 by resolving any conflicts between
mainanddevelopment. So there are a few changes that are getting added to keep things insync.