deleted files

Project.toml

@@ -4,12 +4,12 @@ authors = ["James Fairbanks", "Andrew Baas", "Evan Patterson", "Luke Morris", "G
 version = "0.4.0"
 
 [deps]
-AlgebraicRewriting = "725a01d3-f174-5bbd-84e1-b9417bad95d9"
+ACSets = "227ef7b5-1206-438b-ac65-934d6da304b8"
 Artifacts = "56f22d72-fd6d-98f1-02f0-08ddc0907c33"
 Catlab = "134e5e36-593f-5add-ad60-77f754baafbe"
 CombinatorialSpaces = "b1c52339-7909-45ad-8b6a-6e388f7c67f2"
 DataStructures = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8"
-DiagrammaticEquations = "b66562e1-fa90-4e8b-9505-c909188fab76"
+DiagrammaticEquations = "6f00c28b-6bed-4403-80fa-30e0dc12f317"
 Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f"
 FileIO = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549"
 GLMakie = "e9467ef8-e4e7-5192-8a1a-b1aee30e663a"
@@ -25,9 +25,8 @@ Requires = "ae029012-a4dd-5104-9daa-d747884805df"
 Unicode = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5"
 
 [compat]
-AlgebraicRewriting = "0.2"
-Catlab = "0.15"
-CombinatorialSpaces = "0.5"
+ACSets = "0.2"
+CombinatorialSpaces = "0.5, 0.6"
 DataStructures = "0.18.13"
 Distributions = "0.25"
 FileIO = "1.16"

src/Decapodes.jl

@@ -2,7 +2,7 @@ module Decapodes
 
 using Catlab
 using Catlab.Theories
-import Catlab.Theories: otimes, oplus, compose, ⊗, ⊕, ⋅, associate, associate_unit, Ob, Hom, dom, codom
+# import Catlab.Theories: otimes, oplus, compose, ⊗, ⊕, ⋅, associate, associate_unit, Ob, Hom, dom, codom
 using Catlab.Programs
 using Catlab.CategoricalAlgebra
 using Catlab.WiringDiagrams
@@ -11,37 +11,18 @@ using Catlab.ACSetInterface
 using MLStyle
 using Base.Iterators
 
-# TODO: Matt - Delete
-import Unicode
-
 using DiagrammaticEquations
 
 export
-# DerivOp,
-# append_dot,
-# normalize_unicode, 
 findname, flat_op,
 gensim, evalsim, closest_point, findnode, compile, compile_env,  PhysicsState,  default_dec_matrix_generate, default_dec_generate, default_dec_generate, VectorForm,
-## meshes
 AbstractMeshKey, loadmesh, Icosphere, Rectangle_30x10, Torus_30x10, Point_Map,
-## coordinates 
 CartesianPoint, SpherePoint, r, theta, phi, TangentBasis, θhat, ϕhat  
 
-# TODO - Matt: Delete
-# normalize_unicode(s::String) = Unicode.normalize(s, compose=true, stable=true, chartransform=Unicode.julia_chartransform)
-# normalize_unicode(s::Symbol)  = Symbol(normalize_unicode(String(s)))
-# DerivOp = Symbol("∂ₜ")
-# TODO - Matt: this stays, but DE still has it
 append_dot(s::Symbol) = Symbol(string(s)*'\U0307')
 
-# include("migrate/decapodeacset.jl")
-# include("migrate/language.jl")
-# include("migrate/composition.jl")
-# include("migrate/collages.jl")
 include("coordinates.jl")
-# include("migrate/visualization.jl")
 include("simulation.jl")
 include("meshes.jl")
-# include("migrate/rewrite.jl")
 
 end

test/diag2dwd.jl

@@ -1,7 +1,7 @@
 using Test
 using Catlab
 using Catlab.Theories
-import Catlab.Theories: otimes, oplus, compose, ⊗, ⊕, ⋅, associate, associate_unit, Ob, Hom, dom, codom
+# import Catlab.Theories: otimes, oplus, compose, ⊗, ⊕, ⋅, associate, associate_unit, Ob, Hom, dom, codom
 using Catlab.CategoricalAlgebra
 using Catlab.WiringDiagrams
 using Catlab.WiringDiagrams.DirectedWiringDiagrams