A tool for comparing a nucleotides sequence query with a database of sequences and identify the closest neighbours that resemble the query. The CBN uses signal processing and time series techniques to identify similarities between the query sequence and the sequence database.
Run the appropriate GCC or Intel installation script provided for each system and the ClassificationByNumbers executable will be generated in folder ./Exec.
i.e for a Linux or a Mac executable with GCC compiler
First step make the script executable using
chmod u+x ./GCC_Installation
and then invoke the executable
./GCC_Installation
i.e. for for a Linux or a Mac executable with Intel compiler
First step make the script executable using
chmod u+x ./INTEK_Installation
and then invoke the executable
./INTEL_Installation
- [Complete-Striped-Smith-Waterman-Library] (https://github.com/mengyao/complete-striped-smith-waterman-library) A Smith Waterman alingment algorithm implementation
./ClassificationByNumbers -fa ./References.fasta -r ./ShortReads.fastq -o ./OutputDirectory
For more detailed instructions use
./ClassificationByNumbers -h
- Avraam Tapinos
This work has been supported by the BBSRC [BB/M001121/1], and the VIROGENESIS project which receives funding from the European Union's Horizon 2020 research and innovation programme under grant agreement No 634650.