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Make toil-scripts pip installable #260

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jvivian opened this issue May 2, 2016 · 1 comment
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Make toil-scripts pip installable #260

jvivian opened this issue May 2, 2016 · 1 comment
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jvivian commented May 2, 2016

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@jvivian jvivian self-assigned this May 2, 2016
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jvivian commented May 2, 2016

We want to remove the launch scripts, but need to deal with the nasty PYTHONPATH requirement we have for running these scripts. After speaking with @hannes-ucsc, our solution revolves around making toil-scripts pip installable, and letting each script be responsible for generating the config/manifest at the behest of the user. i.e. running the entrypoint with --generate-config or something along those lines.

jvivian added a commit that referenced this issue May 2, 2016
@jvivian
Make toil-scripts pip installable (resolves #260)
f51a211 
Create setup.py
Add setup.cfg that points to README
Set version in version.py so it can be reached by Makefile and setup.py
Update README for installation and entrypoints
Create Makefile to handle PyPi distribution, tests, and cleaning
Modify Jenkins.sh to use Makefile
@hannes-ucsc hannes-ucsc mentioned this issue May 9, 2016
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hannes-ucsc added a commit that referenced this issue May 9, 2016
@hannes-ucsc
Merge pull request #261 from /issues/260-make-pip-installable
3ada1fc 
Make toil-scripts pip installable (resolves #260)
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