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_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
attr = 'float'
def __getattr__(attr):
# Warn for expired attributes, and return a dummy function
# that always raises an exception.
import warnings
import math
try:
msg = __expired_functions__[attr]
except KeyError:
pass
else:
warnings.warn(msg, DeprecationWarning, stacklevel=2)
def _expired(*args, **kwds):
raise RuntimeError(msg)
return _expired
# Emit warnings for deprecated attributes
try:
val, msg = __deprecated_attrs__[attr]
except KeyError:
pass
else:
warnings.warn(msg, DeprecationWarning, stacklevel=2)
return val
if attr in __future_scalars__:
# And future warnings for those that will change, but also give
# the AttributeError
warnings.warn(
f"In the future `np.{attr}` will be defined as the "
"corresponding NumPy scalar.", FutureWarning, stacklevel=2)
if attr in __former_attrs__:
> raise AttributeError(__former_attrs__[attr])
E AttributeError: module 'numpy' has no attribute 'float'.
E `np.float` was a deprecated alias for the builtin `float`. To avoid this error in existing code, use `float` by itself. Doing this will not modify any behavior and is safe. If you specifically wanted the numpy scalar type, use `np.float64` here.
E The aliases was originally deprecated in NumPy 1.20; for more details and guidance see the original release note at:
E https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
/usr/local/lib/python3.11/site-packages/numpy/__init__.py:324: AttributeError
___________________________________________________________________________ test_devices[MicroCel GSN 100 64 1.0] ___________________________________________________________________________
device = 'MicroCel GSN 100 64 1.0'
@pytest.mark.parametrize("device", [
'Geodesic Head Web 130 1.0',
'Geodesic Head Web 280 1.0',
'Geodesic Sensor Net 64 2.0',
'Geodesic Sensor Net 128 2.1',
'Geodesic Sensor Net 256 2.1',
'HydroCel GSN 32 1.0',
'HydroCel GSN 64 1.0',
'HydroCel GSN 128 1.0',
'HydroCel GSN 256 1.0',
'MicroCel GSN 100 32 1.0',
'MicroCel GSN 100 64 1.0',
'MicroCel GSN 100 128 1.0',
'MicroCel GSN 100 256 1.0',
'Standard 10-20 (19 ch)'
])
def test_devices(device):
"""test integrity of coordinates.xml locations for each supported device
For each device, all electrode locations are compared against
the hashed values in 'mffpy/resources/testing'"""
xmls = coordinates_and_sensor_layout(device)
coords = xmls['coordinates']
locs = np.array([
np.array([props['x'], props['y'], props['z']])
for i, (_, props) in enumerate(coords.sensors.items())
> ], dtype=np.float)
mffpy/tests/test_devices.py:49:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
attr = 'float'
def __getattr__(attr):
# Warn for expired attributes, and return a dummy function
# that always raises an exception.
import warnings
import math
try:
msg = __expired_functions__[attr]
except KeyError:
pass
else:
warnings.warn(msg, DeprecationWarning, stacklevel=2)
def _expired(*args, **kwds):
raise RuntimeError(msg)
return _expired
# Emit warnings for deprecated attributes
try:
val, msg = __deprecated_attrs__[attr]
except KeyError:
pass
else:
warnings.warn(msg, DeprecationWarning, stacklevel=2)
return val
if attr in __future_scalars__:
# And future warnings for those that will change, but also give
# the AttributeError
warnings.warn(
f"In the future `np.{attr}` will be defined as the "
"corresponding NumPy scalar.", FutureWarning, stacklevel=2)
if attr in __former_attrs__:
> raise AttributeError(__former_attrs__[attr])
E AttributeError: module 'numpy' has no attribute 'float'.
E `np.float` was a deprecated alias for the builtin `float`. To avoid this error in existing code, use `float` by itself. Doing this will not modify any behavior and is safe. If you specifically wanted the numpy scalar type, use `np.float64` here.
E The aliases was originally deprecated in NumPy 1.20; for more details and guidance see the original release note at:
E https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
/usr/local/lib/python3.11/site-packages/numpy/__init__.py:324: AttributeError
____________________________________________________________________________ test_devices[HydroCel GSN 128 1.0] _____________________________________________________________________________
device = 'HydroCel GSN 128 1.0'
@pytest.mark.parametrize("device", [
'Geodesic Head Web 130 1.0',
'Geodesic Head Web 280 1.0',
'Geodesic Sensor Net 64 2.0',
'Geodesic Sensor Net 128 2.1',
'Geodesic Sensor Net 256 2.1',
'HydroCel GSN 32 1.0',
'HydroCel GSN 64 1.0',
'HydroCel GSN 128 1.0',
'HydroCel GSN 256 1.0',
'MicroCel GSN 100 32 1.0',
'MicroCel GSN 100 64 1.0',
'MicroCel GSN 100 128 1.0',
'MicroCel GSN 100 256 1.0',
'Standard 10-20 (19 ch)'
])
def test_devices(device):
"""test integrity of coordinates.xml locations for each supported device
For each device, all electrode locations are compared against
the hashed values in 'mffpy/resources/testing'"""
xmls = coordinates_and_sensor_layout(device)
coords = xmls['coordinates']
locs = np.array([
np.array([props['x'], props['y'], props['z']])
for i, (_, props) in enumerate(coords.sensors.items())
> ], dtype=np.float)
mffpy/tests/test_devices.py:49:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
attr = 'float'
def __getattr__(attr):
# Warn for expired attributes, and return a dummy function
# that always raises an exception.
import warnings
import math
try:
msg = __expired_functions__[attr]
except KeyError:
pass
else:
warnings.warn(msg, DeprecationWarning, stacklevel=2)
def _expired(*args, **kwds):
raise RuntimeError(msg)
return _expired
# Emit warnings for deprecated attributes
try:
val, msg = __deprecated_attrs__[attr]
except KeyError:
pass
else:
warnings.warn(msg, DeprecationWarning, stacklevel=2)
return val
if attr in __future_scalars__:
# And future warnings for those that will change, but also give
# the AttributeError
warnings.warn(
f"In the future `np.{attr}` will be defined as the "
"corresponding NumPy scalar.", FutureWarning, stacklevel=2)
if attr in __former_attrs__:
> raise AttributeError(__former_attrs__[attr])
E AttributeError: module 'numpy' has no attribute 'float'.
E `np.float` was a deprecated alias for the builtin `float`. To avoid this error in existing code, use `float` by itself. Doing this will not modify any behavior and is safe. If you specifically wanted the numpy scalar type, use `np.float64` here.
E The aliases was originally deprecated in NumPy 1.20; for more details and guidance see the original release note at:
E https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
/usr/local/lib/python3.11/site-packages/numpy/__init__.py:324: AttributeError
__________________________________________________________________________ test_devices[Geodesic Head Web 130 1.0] __________________________________________________________________________
device = 'Geodesic Head Web 130 1.0'
@pytest.mark.parametrize("device", [
'Geodesic Head Web 130 1.0',
'Geodesic Head Web 280 1.0',
'Geodesic Sensor Net 64 2.0',
'Geodesic Sensor Net 128 2.1',
'Geodesic Sensor Net 256 2.1',
'HydroCel GSN 32 1.0',
'HydroCel GSN 64 1.0',
'HydroCel GSN 128 1.0',
'HydroCel GSN 256 1.0',
'MicroCel GSN 100 32 1.0',
'MicroCel GSN 100 64 1.0',
'MicroCel GSN 100 128 1.0',
'MicroCel GSN 100 256 1.0',
'Standard 10-20 (19 ch)'
])
def test_devices(device):
"""test integrity of coordinates.xml locations for each supported device
For each device, all electrode locations are compared against
the hashed values in 'mffpy/resources/testing'"""
xmls = coordinates_and_sensor_layout(device)
coords = xmls['coordinates']
locs = np.array([
np.array([props['x'], props['y'], props['z']])
for i, (_, props) in enumerate(coords.sensors.items())
> ], dtype=np.float)
mffpy/tests/test_devices.py:49:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
attr = 'float'
def __getattr__(attr):
# Warn for expired attributes, and return a dummy function
# that always raises an exception.
import warnings
import math
try:
msg = __expired_functions__[attr]
except KeyError:
pass
else:
warnings.warn(msg, DeprecationWarning, stacklevel=2)
def _expired(*args, **kwds):
raise RuntimeError(msg)
return _expired
# Emit warnings for deprecated attributes
try:
val, msg = __deprecated_attrs__[attr]
except KeyError:
pass
else:
warnings.warn(msg, DeprecationWarning, stacklevel=2)
return val
if attr in __future_scalars__:
# And future warnings for those that will change, but also give
# the AttributeError
warnings.warn(
f"In the future `np.{attr}` will be defined as the "
"corresponding NumPy scalar.", FutureWarning, stacklevel=2)
if attr in __former_attrs__:
> raise AttributeError(__former_attrs__[attr])
E AttributeError: module 'numpy' has no attribute 'float'.
E `np.float` was a deprecated alias for the builtin `float`. To avoid this error in existing code, use `float` by itself. Doing this will not modify any behavior and is safe. If you specifically wanted the numpy scalar type, use `np.float64` here.
E The aliases was originally deprecated in NumPy 1.20; for more details and guidance see the original release note at:
E https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
/usr/local/lib/python3.11/site-packages/numpy/__init__.py:324: AttributeError
___________________________________________________________________________ test_devices[MicroCel GSN 100 32 1.0] ___________________________________________________________________________
device = 'MicroCel GSN 100 32 1.0'
@pytest.mark.parametrize("device", [
'Geodesic Head Web 130 1.0',
'Geodesic Head Web 280 1.0',
'Geodesic Sensor Net 64 2.0',
'Geodesic Sensor Net 128 2.1',
'Geodesic Sensor Net 256 2.1',
'HydroCel GSN 32 1.0',
'HydroCel GSN 64 1.0',
'HydroCel GSN 128 1.0',
'HydroCel GSN 256 1.0',
'MicroCel GSN 100 32 1.0',
'MicroCel GSN 100 64 1.0',
'MicroCel GSN 100 128 1.0',
'MicroCel GSN 100 256 1.0',
'Standard 10-20 (19 ch)'
])
def test_devices(device):
"""test integrity of coordinates.xml locations for each supported device
For each device, all electrode locations are compared against
the hashed values in 'mffpy/resources/testing'"""
xmls = coordinates_and_sensor_layout(device)
coords = xmls['coordinates']
locs = np.array([
np.array([props['x'], props['y'], props['z']])
for i, (_, props) in enumerate(coords.sensors.items())
> ], dtype=np.float)
mffpy/tests/test_devices.py:49:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
attr = 'float'
def __getattr__(attr):
# Warn for expired attributes, and return a dummy function
# that always raises an exception.
import warnings
import math
try:
msg = __expired_functions__[attr]
except KeyError:
pass
else:
warnings.warn(msg, DeprecationWarning, stacklevel=2)
def _expired(*args, **kwds):
raise RuntimeError(msg)
return _expired
# Emit warnings for deprecated attributes
try:
val, msg = __deprecated_attrs__[attr]
except KeyError:
pass
else:
warnings.warn(msg, DeprecationWarning, stacklevel=2)
return val
if attr in __future_scalars__:
# And future warnings for those that will change, but also give
# the AttributeError
warnings.warn(
f"In the future `np.{attr}` will be defined as the "
"corresponding NumPy scalar.", FutureWarning, stacklevel=2)
if attr in __former_attrs__:
> raise AttributeError(__former_attrs__[attr])
E AttributeError: module 'numpy' has no attribute 'float'.
E `np.float` was a deprecated alias for the builtin `float`. To avoid this error in existing code, use `float` by itself. Doing this will not modify any behavior and is safe. If you specifically wanted the numpy scalar type, use `np.float64` here.
E The aliases was originally deprecated in NumPy 1.20; for more details and guidance see the original release note at:
E https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
/usr/local/lib/python3.11/site-packages/numpy/__init__.py:324: AttributeError
___________________________________________________________________________ test_devices[Standard 10-20 (19 ch)] ____________________________________________________________________________
device = 'Standard 10-20 (19 ch)'
@pytest.mark.parametrize("device", [
'Geodesic Head Web 130 1.0',
'Geodesic Head Web 280 1.0',
'Geodesic Sensor Net 64 2.0',
'Geodesic Sensor Net 128 2.1',
'Geodesic Sensor Net 256 2.1',
'HydroCel GSN 32 1.0',
'HydroCel GSN 64 1.0',
'HydroCel GSN 128 1.0',
'HydroCel GSN 256 1.0',
'MicroCel GSN 100 32 1.0',
'MicroCel GSN 100 64 1.0',
'MicroCel GSN 100 128 1.0',
'MicroCel GSN 100 256 1.0',
'Standard 10-20 (19 ch)'
])
def test_devices(device):
"""test integrity of coordinates.xml locations for each supported device
For each device, all electrode locations are compared against
the hashed values in 'mffpy/resources/testing'"""
xmls = coordinates_and_sensor_layout(device)
coords = xmls['coordinates']
locs = np.array([
np.array([props['x'], props['y'], props['z']])
for i, (_, props) in enumerate(coords.sensors.items())
> ], dtype=np.float)
mffpy/tests/test_devices.py:49:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
attr = 'float'
def __getattr__(attr):
# Warn for expired attributes, and return a dummy function
# that always raises an exception.
import warnings
import math
try:
msg = __expired_functions__[attr]
except KeyError:
pass
else:
warnings.warn(msg, DeprecationWarning, stacklevel=2)
def _expired(*args, **kwds):
raise RuntimeError(msg)
return _expired
# Emit warnings for deprecated attributes
try:
val, msg = __deprecated_attrs__[attr]
except KeyError:
pass
else:
warnings.warn(msg, DeprecationWarning, stacklevel=2)
return val
if attr in __future_scalars__:
# And future warnings for those that will change, but also give
# the AttributeError
warnings.warn(
f"In the future `np.{attr}` will be defined as the "
"corresponding NumPy scalar.", FutureWarning, stacklevel=2)
if attr in __former_attrs__:
> raise AttributeError(__former_attrs__[attr])
E AttributeError: module 'numpy' has no attribute 'float'.
E `np.float` was a deprecated alias for the builtin `float`. To avoid this error in existing code, use `float` by itself. Doing this will not modify any behavior and is safe. If you specifically wanted the numpy scalar type, use `np.float64` here.
E The aliases was originally deprecated in NumPy 1.20; for more details and guidance see the original release note at:
E https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
/usr/local/lib/python3.11/site-packages/numpy/__init__.py:324: AttributeError
_________________________________________________________________________ test_devices[Geodesic Sensor Net 128 2.1] _________________________________________________________________________
device = 'Geodesic Sensor Net 128 2.1'
@pytest.mark.parametrize("device", [
'Geodesic Head Web 130 1.0',
'Geodesic Head Web 280 1.0',
'Geodesic Sensor Net 64 2.0',
'Geodesic Sensor Net 128 2.1',
'Geodesic Sensor Net 256 2.1',
'HydroCel GSN 32 1.0',
'HydroCel GSN 64 1.0',
'HydroCel GSN 128 1.0',
'HydroCel GSN 256 1.0',
'MicroCel GSN 100 32 1.0',
'MicroCel GSN 100 64 1.0',
'MicroCel GSN 100 128 1.0',
'MicroCel GSN 100 256 1.0',
'Standard 10-20 (19 ch)'
])
def test_devices(device):
"""test integrity of coordinates.xml locations for each supported device
For each device, all electrode locations are compared against
the hashed values in 'mffpy/resources/testing'"""
xmls = coordinates_and_sensor_layout(device)
coords = xmls['coordinates']
locs = np.array([
np.array([props['x'], props['y'], props['z']])
for i, (_, props) in enumerate(coords.sensors.items())
> ], dtype=np.float)
mffpy/tests/test_devices.py:49:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
attr = 'float'
def __getattr__(attr):
# Warn for expired attributes, and return a dummy function
# that always raises an exception.
import warnings
import math
try:
msg = __expired_functions__[attr]
except KeyError:
pass
else:
warnings.warn(msg, DeprecationWarning, stacklevel=2)
def _expired(*args, **kwds):
raise RuntimeError(msg)
return _expired
# Emit warnings for deprecated attributes
try:
val, msg = __deprecated_attrs__[attr]
except KeyError:
pass
else:
warnings.warn(msg, DeprecationWarning, stacklevel=2)
return val
if attr in __future_scalars__:
# And future warnings for those that will change, but also give
# the AttributeError
warnings.warn(
f"In the future `np.{attr}` will be defined as the "
"corresponding NumPy scalar.", FutureWarning, stacklevel=2)
if attr in __former_attrs__:
> raise AttributeError(__former_attrs__[attr])
E AttributeError: module 'numpy' has no attribute 'float'.
E `np.float` was a deprecated alias for the builtin `float`. To avoid this error in existing code, use `float` by itself. Doing this will not modify any behavior and is safe. If you specifically wanted the numpy scalar type, use `np.float64` here.
E The aliases was originally deprecated in NumPy 1.20; for more details and guidance see the original release note at:
E https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
/usr/local/lib/python3.11/site-packages/numpy/__init__.py:324: AttributeError
__________________________________________________________________________ test_devices[MicroCel GSN 100 128 1.0] ___________________________________________________________________________
device = 'MicroCel GSN 100 128 1.0'
@pytest.mark.parametrize("device", [
'Geodesic Head Web 130 1.0',
'Geodesic Head Web 280 1.0',
'Geodesic Sensor Net 64 2.0',
'Geodesic Sensor Net 128 2.1',
'Geodesic Sensor Net 256 2.1',
'HydroCel GSN 32 1.0',
'HydroCel GSN 64 1.0',
'HydroCel GSN 128 1.0',
'HydroCel GSN 256 1.0',
'MicroCel GSN 100 32 1.0',
'MicroCel GSN 100 64 1.0',
'MicroCel GSN 100 128 1.0',
'MicroCel GSN 100 256 1.0',
'Standard 10-20 (19 ch)'
])
def test_devices(device):
"""test integrity of coordinates.xml locations for each supported device
For each device, all electrode locations are compared against
the hashed values in 'mffpy/resources/testing'"""
xmls = coordinates_and_sensor_layout(device)
coords = xmls['coordinates']
locs = np.array([
np.array([props['x'], props['y'], props['z']])
for i, (_, props) in enumerate(coords.sensors.items())
> ], dtype=np.float)
mffpy/tests/test_devices.py:49:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
attr = 'float'
def __getattr__(attr):
# Warn for expired attributes, and return a dummy function
# that always raises an exception.
import warnings
import math
try:
msg = __expired_functions__[attr]
except KeyError:
pass
else:
warnings.warn(msg, DeprecationWarning, stacklevel=2)
def _expired(*args, **kwds):
raise RuntimeError(msg)
return _expired
# Emit warnings for deprecated attributes
try:
val, msg = __deprecated_attrs__[attr]
except KeyError:
pass
else:
warnings.warn(msg, DeprecationWarning, stacklevel=2)
return val
if attr in __future_scalars__:
# And future warnings for those that will change, but also give
# the AttributeError
warnings.warn(
f"In the future `np.{attr}` will be defined as the "
"corresponding NumPy scalar.", FutureWarning, stacklevel=2)
if attr in __former_attrs__:
> raise AttributeError(__former_attrs__[attr])
E AttributeError: module 'numpy' has no attribute 'float'.
E `np.float` was a deprecated alias for the builtin `float`. To avoid this error in existing code, use `float` by itself. Doing this will not modify any behavior and is safe. If you specifically wanted the numpy scalar type, use `np.float64` here.
E The aliases was originally deprecated in NumPy 1.20; for more details and guidance see the original release note at:
E https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
/usr/local/lib/python3.11/site-packages/numpy/__init__.py:324: AttributeError
____________________________________________________________________________ test_devices[HydroCel GSN 256 1.0] _____________________________________________________________________________
device = 'HydroCel GSN 256 1.0'
@pytest.mark.parametrize("device", [
'Geodesic Head Web 130 1.0',
'Geodesic Head Web 280 1.0',
'Geodesic Sensor Net 64 2.0',
'Geodesic Sensor Net 128 2.1',
'Geodesic Sensor Net 256 2.1',
'HydroCel GSN 32 1.0',
'HydroCel GSN 64 1.0',
'HydroCel GSN 128 1.0',
'HydroCel GSN 256 1.0',
'MicroCel GSN 100 32 1.0',
'MicroCel GSN 100 64 1.0',
'MicroCel GSN 100 128 1.0',
'MicroCel GSN 100 256 1.0',
'Standard 10-20 (19 ch)'
])
def test_devices(device):
"""test integrity of coordinates.xml locations for each supported device
For each device, all electrode locations are compared against
the hashed values in 'mffpy/resources/testing'"""
xmls = coordinates_and_sensor_layout(device)
coords = xmls['coordinates']
locs = np.array([
np.array([props['x'], props['y'], props['z']])
for i, (_, props) in enumerate(coords.sensors.items())
> ], dtype=np.float)
mffpy/tests/test_devices.py:49:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
attr = 'float'
def __getattr__(attr):
# Warn for expired attributes, and return a dummy function
# that always raises an exception.
import warnings
import math
try:
msg = __expired_functions__[attr]
except KeyError:
pass
else:
warnings.warn(msg, DeprecationWarning, stacklevel=2)
def _expired(*args, **kwds):
raise RuntimeError(msg)
return _expired
# Emit warnings for deprecated attributes
try:
val, msg = __deprecated_attrs__[attr]
except KeyError:
pass
else:
warnings.warn(msg, DeprecationWarning, stacklevel=2)
return val
if attr in __future_scalars__:
# And future warnings for those that will change, but also give
# the AttributeError
warnings.warn(
f"In the future `np.{attr}` will be defined as the "
"corresponding NumPy scalar.", FutureWarning, stacklevel=2)
if attr in __former_attrs__:
> raise AttributeError(__former_attrs__[attr])
E AttributeError: module 'numpy' has no attribute 'float'.
E `np.float` was a deprecated alias for the builtin `float`. To avoid this error in existing code, use `float` by itself. Doing this will not modify any behavior and is safe. If you specifically wanted the numpy scalar type, use `np.float64` here.
E The aliases was originally deprecated in NumPy 1.20; for more details and guidance see the original release note at:
E https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
/usr/local/lib/python3.11/site-packages/numpy/__init__.py:324: AttributeError
__________________________________________________________________________ test_devices[Geodesic Head Web 280 1.0] __________________________________________________________________________
device = 'Geodesic Head Web 280 1.0'
@pytest.mark.parametrize("device", [
'Geodesic Head Web 130 1.0',
'Geodesic Head Web 280 1.0',
'Geodesic Sensor Net 64 2.0',
'Geodesic Sensor Net 128 2.1',
'Geodesic Sensor Net 256 2.1',
'HydroCel GSN 32 1.0',
'HydroCel GSN 64 1.0',
'HydroCel GSN 128 1.0',
'HydroCel GSN 256 1.0',
'MicroCel GSN 100 32 1.0',
'MicroCel GSN 100 64 1.0',
'MicroCel GSN 100 128 1.0',
'MicroCel GSN 100 256 1.0',
'Standard 10-20 (19 ch)'
])
def test_devices(device):
"""test integrity of coordinates.xml locations for each supported device
For each device, all electrode locations are compared against
the hashed values in 'mffpy/resources/testing'"""
xmls = coordinates_and_sensor_layout(device)
coords = xmls['coordinates']
locs = np.array([
np.array([props['x'], props['y'], props['z']])
for i, (_, props) in enumerate(coords.sensors.items())
> ], dtype=np.float)
mffpy/tests/test_devices.py:49:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
attr = 'float'
def __getattr__(attr):
# Warn for expired attributes, and return a dummy function
# that always raises an exception.
import warnings
import math
try:
msg = __expired_functions__[attr]
except KeyError:
pass
else:
warnings.warn(msg, DeprecationWarning, stacklevel=2)
def _expired(*args, **kwds):
raise RuntimeError(msg)
return _expired
# Emit warnings for deprecated attributes
try:
val, msg = __deprecated_attrs__[attr]
except KeyError:
pass
else:
warnings.warn(msg, DeprecationWarning, stacklevel=2)
return val
if attr in __future_scalars__:
# And future warnings for those that will change, but also give
# the AttributeError
warnings.warn(
f"In the future `np.{attr}` will be defined as the "
"corresponding NumPy scalar.", FutureWarning, stacklevel=2)
if attr in __former_attrs__:
> raise AttributeError(__former_attrs__[attr])
E AttributeError: module 'numpy' has no attribute 'float'.
E `np.float` was a deprecated alias for the builtin `float`. To avoid this error in existing code, use `float` by itself. Doing this will not modify any behavior and is safe. If you specifically wanted the numpy scalar type, use `np.float64` here.
E The aliases was originally deprecated in NumPy 1.20; for more details and guidance see the original release note at:
E https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
/usr/local/lib/python3.11/site-packages/numpy/__init__.py:324: AttributeError
_________________________________________________________________________ test_devices[Geodesic Sensor Net 64 2.0] __________________________________________________________________________
device = 'Geodesic Sensor Net 64 2.0'
@pytest.mark.parametrize("device", [
'Geodesic Head Web 130 1.0',
'Geodesic Head Web 280 1.0',
'Geodesic Sensor Net 64 2.0',
'Geodesic Sensor Net 128 2.1',
'Geodesic Sensor Net 256 2.1',
'HydroCel GSN 32 1.0',
'HydroCel GSN 64 1.0',
'HydroCel GSN 128 1.0',
'HydroCel GSN 256 1.0',
'MicroCel GSN 100 32 1.0',
'MicroCel GSN 100 64 1.0',
'MicroCel GSN 100 128 1.0',
'MicroCel GSN 100 256 1.0',
'Standard 10-20 (19 ch)'
])
def test_devices(device):
"""test integrity of coordinates.xml locations for each supported device
For each device, all electrode locations are compared against
the hashed values in 'mffpy/resources/testing'"""
xmls = coordinates_and_sensor_layout(device)
coords = xmls['coordinates']
locs = np.array([
np.array([props['x'], props['y'], props['z']])
for i, (_, props) in enumerate(coords.sensors.items())
> ], dtype=np.float)
mffpy/tests/test_devices.py:49:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
attr = 'float'
def __getattr__(attr):
# Warn for expired attributes, and return a dummy function
# that always raises an exception.
import warnings
import math
try:
msg = __expired_functions__[attr]
except KeyError:
pass
else:
warnings.warn(msg, DeprecationWarning, stacklevel=2)
def _expired(*args, **kwds):
raise RuntimeError(msg)
return _expired
# Emit warnings for deprecated attributes
try:
val, msg = __deprecated_attrs__[attr]
except KeyError:
pass
else:
warnings.warn(msg, DeprecationWarning, stacklevel=2)
return val
if attr in __future_scalars__:
# And future warnings for those that will change, but also give
# the AttributeError
warnings.warn(
f"In the future `np.{attr}` will be defined as the "
"corresponding NumPy scalar.", FutureWarning, stacklevel=2)
if attr in __former_attrs__:
> raise AttributeError(__former_attrs__[attr])
E AttributeError: module 'numpy' has no attribute 'float'.
E `np.float` was a deprecated alias for the builtin `float`. To avoid this error in existing code, use `float` by itself. Doing this will not modify any behavior and is safe. If you specifically wanted the numpy scalar type, use `np.float64` here.
E The aliases was originally deprecated in NumPy 1.20; for more details and guidance see the original release note at:
E https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
/usr/local/lib/python3.11/site-packages/numpy/__init__.py:324: AttributeError
____________________________________________________________________________________ test_overwrite_mfz _____________________________________________________________________________________
tmpdir = local('/tmp/pytest-of-yuri/pytest-55/test_overwrite_mfz0')
def test_overwrite_mfz(tmpdir):
"""Test mffdir and mfz file are overwritten when overwrite is on"""
mfzpath = join(tmpdir, 'test.mfz')
mffpath = splitext(mfzpath)[0] + '.mff'
time1 = datetime.strptime('1984-02-18T14:00:10.000000+0100',
"%Y-%m-%dT%H:%M:%S.%f%z")
time2 = datetime.strptime('1973-10-23T14:00:10.000000+0100',
"%Y-%m-%dT%H:%M:%S.%f%z")
W1 = Writer(mfzpath)
W1.addxml('fileInfo', recordTime=time1)
> W1.write()
mffpy/tests/test_writer.py:153:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
mffpy/writer.py:69: in write
check_output(['mff2mfz.py', self.mffdir])
/usr/local/lib/python3.11/subprocess.py:466: in check_output
return run(*popenargs, stdout=PIPE, timeout=timeout, check=True,
/usr/local/lib/python3.11/subprocess.py:548: in run
with Popen(*popenargs, **kwargs) as process:
/usr/local/lib/python3.11/subprocess.py:1026: in __init__
self._execute_child(args, executable, preexec_fn, close_fds,
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self = <Popen: returncode: 255 args: ['mff2mfz.py', '/tmp/pytest-of-yuri/pytest-55/...>, args = ['mff2mfz.py', '/tmp/pytest-of-yuri/pytest-55/test_overwrite_mfz0/test.mff']
executable = b'mff2mfz.py', preexec_fn = None, close_fds = True, pass_fds = (), cwd = None, env = None, startupinfo = None, creationflags = 0, shell = False, p2cread = -1, p2cwrite = -1
c2pread = 13, c2pwrite = 14, errread = -1, errwrite = -1, restore_signals = True, gid = None, gids = None, uid = None, umask = -1, start_new_session = False, process_group = -1
def _execute_child(self, args, executable, preexec_fn, close_fds,
pass_fds, cwd, env,
startupinfo, creationflags, shell,
p2cread, p2cwrite,
c2pread, c2pwrite,
errread, errwrite,
restore_signals,
gid, gids, uid, umask,
start_new_session, process_group):
"""Execute program (POSIX version)"""
if isinstance(args, (str, bytes)):
args = [args]
elif isinstance(args, os.PathLike):
if shell:
raise TypeError('path-like args is not allowed when '
'shell is true')
args = [args]
else:
args = list(args)
if shell:
# On Android the default shell is at '/system/bin/sh'.
unix_shell = ('/system/bin/sh' if
hasattr(sys, 'getandroidapilevel') else '/bin/sh')
args = [unix_shell, "-c"] + args
if executable:
args[0] = executable
if executable is None:
executable = args[0]
sys.audit("subprocess.Popen", executable, args, cwd, env)
if (_USE_POSIX_SPAWN
and os.path.dirname(executable)
and preexec_fn is None
and not close_fds
and not pass_fds
and cwd is None
and (p2cread == -1 or p2cread > 2)
and (c2pwrite == -1 or c2pwrite > 2)
and (errwrite == -1 or errwrite > 2)
and not start_new_session
and process_group == -1
and gid is None
and gids is None
and uid is None
and umask < 0):
self._posix_spawn(args, executable, env, restore_signals,
p2cread, p2cwrite,
c2pread, c2pwrite,
errread, errwrite)
return
orig_executable = executable
# For transferring possible exec failure from child to parent.
# Data format: "exception name:hex errno:description"
# Pickle is not used; it is complex and involves memory allocation.
errpipe_read, errpipe_write = os.pipe()
# errpipe_write must not be in the standard io 0, 1, or 2 fd range.
low_fds_to_close = []
while errpipe_write < 3:
low_fds_to_close.append(errpipe_write)
errpipe_write = os.dup(errpipe_write)
for low_fd in low_fds_to_close:
os.close(low_fd)
try:
try:
# We must avoid complex work that could involve
# malloc or free in the child process to avoid
# potential deadlocks, thus we do all this here.
# and pass it to fork_exec()
if env is not None:
env_list = []
for k, v in env.items():
k = os.fsencode(k)
if b'=' in k:
raise ValueError("illegal environment variable name")
env_list.append(k + b'=' + os.fsencode(v))
else:
env_list = None # Use execv instead of execve.
executable = os.fsencode(executable)
if os.path.dirname(executable):
executable_list = (executable,)
else:
# This matches the behavior of os._execvpe().
executable_list = tuple(
os.path.join(os.fsencode(dir), executable)
for dir in os.get_exec_path(env))
fds_to_keep = set(pass_fds)
fds_to_keep.add(errpipe_write)
self.pid = _fork_exec(
args, executable_list,
close_fds, tuple(sorted(map(int, fds_to_keep))),
cwd, env_list,
p2cread, p2cwrite, c2pread, c2pwrite,
errread, errwrite,
errpipe_read, errpipe_write,
restore_signals, start_new_session,
process_group, gid, gids, uid, umask,
preexec_fn, _USE_VFORK)
self._child_created = True
finally:
# be sure the FD is closed no matter what
os.close(errpipe_write)
self._close_pipe_fds(p2cread, p2cwrite,
c2pread, c2pwrite,
errread, errwrite)
# Wait for exec to fail or succeed; possibly raising an
# exception (limited in size)
errpipe_data = bytearray()
while True:
part = os.read(errpipe_read, 50000)
errpipe_data += part
if not part or len(errpipe_data) > 50000:
break
finally:
# be sure the FD is closed no matter what
os.close(errpipe_read)
if errpipe_data:
try:
pid, sts = os.waitpid(self.pid, 0)
if pid == self.pid:
self._handle_exitstatus(sts)
else:
self.returncode = sys.maxsize
except ChildProcessError:
pass
try:
exception_name, hex_errno, err_msg = (
errpipe_data.split(b':', 2))
# The encoding here should match the encoding
# written in by the subprocess implementations
# like _posixsubprocess
err_msg = err_msg.decode()
except ValueError:
exception_name = b'SubprocessError'
hex_errno = b'0'
err_msg = 'Bad exception data from child: {!r}'.format(
bytes(errpipe_data))
child_exception_type = getattr(
builtins, exception_name.decode('ascii'),
SubprocessError)
if issubclass(child_exception_type, OSError) and hex_errno:
errno_num = int(hex_errno, 16)
if err_msg == "noexec:chdir":
err_msg = ""
# The error must be from chdir(cwd).
err_filename = cwd
elif err_msg == "noexec":
err_msg = ""
err_filename = None
else:
err_filename = orig_executable
if errno_num != 0:
err_msg = os.strerror(errno_num)
if err_filename is not None:
> raise child_exception_type(errno_num, err_msg, err_filename)
E FileNotFoundError: [Errno 2] No such file or directory: 'mff2mfz.py'
/usr/local/lib/python3.11/subprocess.py:1955: FileNotFoundError
============================================================================== 15 failed, 109 passed in 8.98s ===============================================================================
Version: 0.10.0
Python-3.11
numpy-1.26.4
FreeBSD 14.1
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