adds celldemo_FindMaxima_makeSpots.groovy #56
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NicoKiaru
reviewed
Aug 29, 2023
| * B - create Imaris spots from the Results Table | ||
| */ | ||
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| // start-up cleaning |
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cleaning what ? (I guess the results table)
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and the roiManager , close all the images and make sure to be connected to Imaris
| IJ.run("Close All", ""); | ||
| EasyXT.Utils.connectToImaris() | ||
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| // imports |
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Usually we put the imports at the end of the scripts (@lacan 's convention)
| IJ.run(c3_imp, "Median 3D...", "x=2 y=2 z=2"); | ||
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| // Use a simple FindMaxima per Slice | ||
| // (more adavaned tools can be used like RS-FISH (https://github.com/PreibischLab/RS-FISH#download , update site : "Radial Symmetry") ) |
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| radiusXYZ = new Point3D() | ||
| radiusXYZ.setX(xRad_spot as double ) | ||
| radiusXYZ.setY(yRad_spot as double) | ||
| radiusXYZ.setZ(zRad_spot as double ) |
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Why are these lines necessary ? I don't get it
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is it more clear with d10eaff ?
| return pt | ||
| } | ||
| // Finally create the ImarisSpots | ||
| spots = EasyXT.Spots.create(coordinates , radiusXYZ, 0)// single timepoint -> 0 |
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