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allow for batched inference with observational SIR model, add test for batched inference #1714

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allow for batched inference with observational SIR model, add test for batched inference

allow for batched inference with observational SIR model, add test for batched inference #1714

Workflow file for this run

.github/workflows/test.yml at 601ee23
name: Test
on:
push:
branches: [ master ]
pull_request:
branches: [ master, staging-* ]
jobs:
build:
runs-on: ${{ matrix.os }}
strategy:
fail-fast: false
matrix:
python-version: [3.8, 3.9, '3.10']
os: [ubuntu-latest] # , macos-latest]
steps:
- uses: actions/checkout@v2
- name: Ubuntu cache
uses: actions/cache@v1
if: startsWith(matrix.os, 'ubuntu')
with:
path: ~/.cache/pip
key:
${{ matrix.os }}-${{ matrix.python-version }}-${{ hashFiles('**/pyproject.toml') }}
restore-keys: |
${{ matrix.os }}-${{ matrix.python-version }}-
- name: macOS cache
uses: actions/cache@v1
if: startsWith(matrix.os, 'macOS')
with:
path: ~/Library/Caches/pip
key:
${{ matrix.os }}-${{ matrix.python-version }}-${{ hashFiles('**/pyproject.toml') }}
restore-keys: |
${{ matrix.os }}-${{ matrix.python-version }}-
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v1
with:
python-version: ${{ matrix.python-version }}
- name: Install dependencies
run: |
sudo apt install -y pandoc
python -m pip install --upgrade pip
pip install .[test]
- name: Test
shell: bash
run: |
MKL_NUM_THREADS=1 pytest tests/ -s -n auto --cov=chirho/ --cov-report=term-missing ${@-}
cd docs && make html