update gitignore to exclude sequencing related data #13
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: CI Build | |
| on: | |
| pull_request: | |
| push: | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: [ '3.9', '3.10', '3.11' ] | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Upgrade pip | |
| run: | | |
| python -m pip install --upgrade pip | |
| - name: Install dependencies | |
| run: | | |
| if [ -f requirements-dev.txt ]; then pip install -r requirements-dev.txt; fi | |
| if [ -f requirements.txt ]; then pip install -r requirements.txt; fi | |
| # - name: Lint with flake8 | |
| # run: flake8 | |
| # - name: docstring coverage | |
| # run: | | |
| # docstr-coverage seqteleporter/ --fail-under=100 --badge="./docs_badge.svg" | |
| - name: Test with python unittest | |
| run: | | |
| coverage run -m unittest discover -s tests/ | |
| coverage report -m | |
| # - name: Generate demo | |
| # run: | | |
| # jupyter nbconvert ./demo/seqTeleporter_demo.ipynb --to html --ouput index --output-dir ./ |