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Fixed an issue causing bowtie2's memory usage to increase over time.
Fixed an issue causing bowtie2 to crash when processing empty FASTQ records.
Fixed an issue that would cause bowtie2 to erroneously treat -f and -F as mutually exclusive.
Add optional support for libsais to bowtie2-build for faster index building.
N.B. -- small indexes are capped at 2GB when using libsais as opposed to 4GB when using the
default blockwise algorithm. See MANUAL for more details.