Bump pandoc version

BerriJ · Aug 2, 2024 · 0862a06 · 0862a06
1 parent c25cf09
commit 0862a06
Showing 1 changed file with 77 additions and 77 deletions.
diff --git a/Dockerfile b/Dockerfile
@@ -3,7 +3,7 @@ FROM ubuntu:jammy@sha256:19478ce7fc2ffbce89df29fea5725a8d12e57de52eb9ea570890dc5
 SHELL ["/bin/bash", "-c"]
 
 ENV DISPLAY=:0 \
-    TZ=Europe/Berlin
+  TZ=Europe/Berlin
 
 ARG USERNAME=vscode
 ARG USER_UID=1000
@@ -12,54 +12,54 @@ ARG DEBIAN_FRONTEND=noninteractive
 
 # Add non root user
 RUN groupadd --gid $USER_GID $USERNAME \
-    && useradd -rm -d /home/$USERNAME -s /bin/bash -g root --uid $USER_UID --gid $USER_GID $USERNAME \
-    && addgroup $USERNAME staff
+  && useradd -rm -d /home/$USERNAME -s /bin/bash -g root --uid $USER_UID --gid $USER_GID $USERNAME \
+  && addgroup $USERNAME staff
 
 # Create folders to mount extensions
 RUN mkdir -p /home/$USERNAME/.vscode-server/extensions \
-    /home/$USERNAME/.vscode-server-insiders/extensions \
-    workspaces \
-    && chown -R $USERNAME \
-    /home/$USERNAME/.vscode-server \
-    /home/$USERNAME/.vscode-server-insiders \
-    workspaces
+  /home/$USERNAME/.vscode-server-insiders/extensions \
+  workspaces \
+  && chown -R $USERNAME \
+  /home/$USERNAME/.vscode-server \
+  /home/$USERNAME/.vscode-server-insiders \
+  workspaces
 
 # Ubuntu Setup
 RUN echo "ttf-mscorefonts-installer msttcorefonts/accepted-mscorefonts-eula select true" | debconf-set-selections &&\
-    apt-get update &&\
-    apt-get -y --no-install-recommends install \
-    ca-certificates \
-    git \
-    build-essential \
-    cmake \
-    ninja-build \
-    ccache \
-    gfortran \
-    netbase \
-    zip \
-    unzip \
-    xclip \
-    zsh \
-    lftp \
-    gnupg2 \
-    nano \
-    gdb \
-    ssh-client \
-    fontconfig \
-    pkg-config \
-    default-libmysqlclient-dev \
-    ttf-mscorefonts-installer \
-    locales &&\
-    locale-gen en_US.UTF-8 &&\
-    locale-gen de_DE.UTF-8 &&\
-    update-locale LANG=en_US.UTF-8 &&\
-    git clone --depth=1 https://github.com/sindresorhus/pure.git /home/$USERNAME/.zsh/pure \
-    && rm -rf /home/$USERNAME/.zsh/pure/.git \
-    && apt-get autoclean -y \
-    && rm -rf /var/lib/apt/lists/*
+  apt-get update &&\
+  apt-get -y --no-install-recommends install \
+  ca-certificates \
+  git \
+  build-essential \
+  cmake \
+  ninja-build \
+  ccache \
+  gfortran \
+  netbase \
+  zip \
+  unzip \
+  xclip \
+  zsh \
+  lftp \
+  gnupg2 \
+  nano \
+  gdb \
+  ssh-client \
+  fontconfig \
+  pkg-config \
+  default-libmysqlclient-dev \
+  ttf-mscorefonts-installer \
+  locales &&\
+  locale-gen en_US.UTF-8 &&\
+  locale-gen de_DE.UTF-8 &&\
+  update-locale LANG=en_US.UTF-8 &&\
+  git clone --depth=1 https://github.com/sindresorhus/pure.git /home/$USERNAME/.zsh/pure \
+  && rm -rf /home/$USERNAME/.zsh/pure/.git \
+  && apt-get autoclean -y \
+  && rm -rf /var/lib/apt/lists/*
 
 ENV LC_ALL=en_US.UTF-8 \
-    LANG=en_US.UTF-8
+  LANG=en_US.UTF-8
 
 # Font config
 # "LM Roman 10", "Times New Roman" ... use `showtext` package in R
@@ -74,52 +74,52 @@ RUN fc-cache -f -v
 ENV QUARTO_VERSION="1.4.551"
 COPY install_scripts/install_quarto.sh /install_scripts/install_quarto.sh
 RUN chmod +x install_scripts/install_quarto.sh &&\
-    install_scripts/install_quarto.sh
+  install_scripts/install_quarto.sh
 
-RUN wget https://github.com/jgm/pandoc/releases/download/3.2.1/pandoc-3.2.1-1-amd64.deb &&\
-    dpkg -i pandoc-3.2.1-1-amd64.deb
+RUN wget https://github.com/jgm/pandoc/releases/download/3.3/pandoc-3.3-1-amd64.deb &&\
+  dpkg -i pandoc-3.3-1-amd64.deb
 
 # Install phantomjs
 COPY install_scripts/install_phantomjs.sh /install_scripts/install_phantomjs.sh
 
 RUN chmod +x install_scripts/install_phantomjs.sh &&\
-    install_scripts/install_phantomjs.sh
+  install_scripts/install_phantomjs.sh
 
 # Install vcpkg C++ dependency manager
 RUN git clone --depth=1 https://github.com/Microsoft/vcpkg --branch 2024.04.26 /usr/local/vcpkg \
-    && rm -rf /usr/local/vcpkg/.git \
-    && cd /usr/local/vcpkg \
-    && ./bootstrap-vcpkg.sh \
-    && ./vcpkg integrate install \
-    && /usr/local/vcpkg/vcpkg install armadillo \
-    && /usr/local/vcpkg/vcpkg install pybind11 \
-    && chown --recursive $USERNAME:$USERNAME /usr/local/vcpkg
+  && rm -rf /usr/local/vcpkg/.git \
+  && cd /usr/local/vcpkg \
+  && ./bootstrap-vcpkg.sh \
+  && ./vcpkg integrate install \
+  && /usr/local/vcpkg/vcpkg install armadillo \
+  && /usr/local/vcpkg/vcpkg install pybind11 \
+  && chown --recursive $USERNAME:$USERNAME /usr/local/vcpkg
 
 ENV PATH="/usr/local/vcpkg:${PATH}"
 
 # Install Python CARMA
 RUN git clone --depth=1 https://github.com/RUrlus/carma.git /usr/local/carma \
-    && rm -rf /usr/local/carma/.git \
-    && cd /usr/local/carma \
-    && mkdir build \
-    && cd build \
-    && cmake -DCARMA_INSTALL_LIB=ON .. \
-    && cmake --build . --config Release --target install \
-    && rm -rf /usr/local/carma
+  && rm -rf /usr/local/carma/.git \
+  && cd /usr/local/carma \
+  && mkdir build \
+  && cd build \
+  && cmake -DCARMA_INSTALL_LIB=ON .. \
+  && cmake --build . --config Release --target install \
+  && rm -rf /usr/local/carma
 
 # Install Python
 COPY package_lists/python_packages.txt /package_lists/python_packages.txt
 
 RUN apt-get update &&\
-    apt-get -y --no-install-recommends install \
-    python3-pip  \
-    python3-dev \
-    python3-venv && \
-    # Python packages
-    pip3 install -U --no-cache-dir \
-    $(grep -o '^[^#]*' package_lists/python_packages.txt | tr '\n' ' ')  \
-    && apt-get autoclean -y \
-    && rm -rf /var/lib/apt/lists/*
+  apt-get -y --no-install-recommends install \
+  python3-pip  \
+  python3-dev \
+  python3-venv && \
+  # Python packages
+  pip3 install -U --no-cache-dir \
+  $(grep -o '^[^#]*' package_lists/python_packages.txt | tr '\n' ' ')  \
+  && apt-get autoclean -y \
+  && rm -rf /var/lib/apt/lists/*
 
 # Set PATH for user installed python packages
 ENV PATH="/home/vscode/.local/bin:${PATH}"
@@ -129,14 +129,14 @@ COPY install_scripts/install_latex.sh /install_scripts/install_latex.sh
 COPY package_lists/latex_packages.txt /package_lists/latex_packages.txt
 
 RUN chmod +x install_scripts/install_latex.sh &&\
-    install_scripts/install_latex.sh \
-    && export PATH="/usr/local/texlive/bin/x86_64-linux:${PATH}" \
-    && tlmgr option -- autobackup 0 \
-    && tlmgr option -- docfiles 0 \
-    && tlmgr option -- srcfiles 0 \
-    && tlmgr install \
-    $(grep -o '^[^#]*' package_lists/latex_packages.txt | tr '\n' ' ') \
-    && chown --recursive $USERNAME:$USERNAME /usr/local/texlive
+  install_scripts/install_latex.sh \
+  && export PATH="/usr/local/texlive/bin/x86_64-linux:${PATH}" \
+  && tlmgr option -- autobackup 0 \
+  && tlmgr option -- docfiles 0 \
+  && tlmgr option -- srcfiles 0 \
+  && tlmgr install \
+  $(grep -o '^[^#]*' package_lists/latex_packages.txt | tr '\n' ' ') \
+  && chown --recursive $USERNAME:$USERNAME /usr/local/texlive
 
 # Set Latex Path
 ENV PATH="/usr/local/texlive/bin/x86_64-linux:${PATH}"
@@ -153,7 +153,7 @@ COPY package_lists/r_packages.txt /package_lists/r_packages.txt
 COPY package_lists/r_packages_github.txt /package_lists/r_packages_github.txt
 
 RUN chmod +x install_scripts/install_r.sh &&\
-    install_scripts/install_r.sh
+  install_scripts/install_r.sh
 
 COPY --chown=$USERNAME .misc/.zshrc /home/$USERNAME/.