Switched to paxtools 5.1.0. Also removed the old licence text from co…

…mments in most files.

.gitignore

@@ -6,4 +6,5 @@ target
 *.iml
 .idea
 .springBeans
-geo_data
+geo_data
+.extract

biopax-validator-client/src/main/java/org/biopax/validator/BiopaxValidatorClient.java

@@ -1,25 +1,7 @@
 package org.biopax.validator;
 
 /*
- * #%L
- * BioPAX Validator Client
- * %%
- * Copyright (C) 2008 - 2013 University of Toronto (baderlab.org) and Memorial Sloan-Kettering Cancer Center (cbio.mskcc.org)
- * %%
- * This program is free software: you can redistribute it and/or modify
- * it under the terms of the GNU Lesser General Public License as 
- * published by the Free Software Foundation, either version 3 of the 
- * License, or (at your option) any later version.
- * 
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
- * GNU General Lesser Public License for more details.
- * 
- * You should have received a copy of the GNU General Lesser Public 
- * License along with this program.  If not, see
- * <http://www.gnu.org/licenses/lgpl-3.0.html>.
- * #L%
+ *
  */
 
 import java.io.*;

biopax-validator-client/src/test/java/BiopaxValidatorClientTest.java

@@ -1,23 +1,5 @@
 /*
- * #%L
- * BioPAX Validator Client
- * %%
- * Copyright (C) 2008 - 2013 University of Toronto (baderlab.org) and Memorial Sloan-Kettering Cancer Center (cbio.mskcc.org)
- * %%
- * This program is free software: you can redistribute it and/or modify
- * it under the terms of the GNU Lesser General Public License as 
- * published by the Free Software Foundation, either version 3 of the 
- * License, or (at your option) any later version.
- * 
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
- * GNU General Lesser Public License for more details.
- * 
- * You should have received a copy of the GNU General Lesser Public 
- * License along with this program.  If not, see
- * <http://www.gnu.org/licenses/lgpl-3.0.html>.
- * #L%
+ *
  */
 import java.io.*;