Deployment fixes

.gitignore

@@ -0,0 +1,70 @@
+build*
+preprocessing/build*
+__pycache__
+*__init__.py
+*.csv
+BioTrackerAnalysis
+*.dll
+
+GeneratedFiles/
+CMakeLists.txt.user
+desktop.ini
+*.swp
+*.opensdf
+*.sdf
+*.suo
+*.exe
+*.psess
+*.vsp
+*.ipch
+*.sln
+*.vcxproj
+*.vcxproj.filters
+*.vcxproj.vspscc
+.gitignore.swp
+*.bak_*
+BioTracker.apparmor
+CMakeLists.txt.user.3.2-pre1
+manifest.json
+
+# ignore editor ~ files
+.tags*
+Doxyfile
+CMakeCache.txt
+Makefile
+cmake_install.cmake
+doxygen_sqlite3.db
+*~
+.idea/
+
+/CMakeFiles
+/doc
+/html
+/Debug
+/Release
+/build*
+/Build*
+*.kate-swp
+
+# astyle original files
+*.orig
+*.user
+*.obj
+*.dll
+*.qm
+*.avi
+*moc_*
+*.tlog
+*.log
+*.ilk
+*.lib
+*.lastbuildstate
+*.stamp
+*.depend
+*.pdb
+*.exp
+*.db
+*.opendb
+CMakeFiles
+*.cache
+*.csv

preprocessing/freeze.py

@@ -0,0 +1,41 @@
+from cx_Freeze import setup, Executable
+import os
+import sys
+import distutils
+import opcode
+
+base = None
+
+#TODO generic...
+pythonPath = r'C:/Users/MyUser/Anaconda3/'
+
+os.environ['TCL_LIBRARY'] = pythonPath + r'tcl/tcl8.6'
+os.environ['TK_LIBRARY'] = pythonPath + r'tcl/tk8.6'
+executables = [Executable("mainWindow.py", base=base)]
+
+options = {
+    'build_exe': {
+
+        'packages':['pandas', 'scipy', 'numpy', 'idna', 'seaborn', 'os'],
+		'excludes':['scipy.spatial.cKDTree'],
+		'includes':['scipy'],
+		'include_files':[pythonPath + 'DLLs/sqlite3.dll']
+    },
+}
+
+setup(
+    name = "BioTrackerAnalysis",
+    options = options,
+    version = "1.0",
+    description = 'BioTrackerAnalysis',
+    executables = executables
+)
+
+lst = os.listdir('build');
+if (len(lst) == 1):
+	os.rename('build/'+lst[0], '../BioTrackerAnalysis')
+	os.rmdir('build')
+	from distutils.dir_util import copy_tree
+	copy_tree("settings", "../BioTrackerAnalysis/settings")
+	copy_tree("data_processing", "../BioTrackerAnalysis/data_processing")
+	copy_tree("stats", "../BioTrackerAnalysis/stats")

preprocessing/settings/dict_data.json

@@ -1 +1,12 @@
-{"agent_specifications": ["_x", "_y", "_angle"], "other": [], "muesli_x": "7", "time": "2", "muesli_y": "8", "time_labels": ["frames", "time"], "frames": 1, "agent_names": ["muesli"], "info": {"angle": "deg", "time": "ms"}, "muesli_angle": "9"}
+{
+	"agent_specifications": ["_x", "_y", "_angle"], 
+	"other": [], 
+	"agent_x": "7", 
+	"time": "2", 
+	"agent_y": "8", 
+	"time_labels": ["frames", "time"], 
+	"frames": 1, 
+	"agent_names": ["agent"], 
+	"info": {"angle": "deg", "time": "ms"}, 
+	"agent_angle": "9"
+}