v4.0.4

What's Changed

• Add python3.13 & remove EOL python3.8 by @eleftherioszisis in #1132

Full Changelog: v4.0.3...v4.0.4

v4.0.3

What's Changed

• Prepare for Python 3.13, fix issues with numpy>2 & matplotlib, by @eleftherioszisis in #1131

Full Changelog: v4.0.2...v4.0.3

v4.0.2

What's Changed

• Reduce soma volume measurement test precision by @eleftherioszisis in #1128
• Clean doc warnings by @mgeplf in #1124

Full Changelog: v4.0.1...v4.0.2

v4.0.1

What's Changed

• Allow axon-carrying-dendrite with fork axon subtrees by @eleftherioszisis in #1127

Full Changelog: v4.0.0...v4.0.1

v4.0.0: Axon carrying dendrite

This major release allows for statistics on mixed subtrees; for instance Axon Carrying Dendrites.
To support this, many changes were made, including:

• Morphology class accepts only morphio objects, not files anymore. (#1120)
• Replace iter_* methods by properties in core objects and improve iter_segments. (#1054)
• NeuriteType extended to allow mixed type declarations as tuple of ints. (#1071)
• All features return built-in types (#1064)
• Morphology class also allows mutable morphio objects to be passed explicitly. (#1049)
• Morphology class uses morphio immutable class by composition, istead of inheritance. (#979)
• Morphology level radial distance features use the somata as reference point. (#1030)
• Make neurom.core.Population resolve paths. Symlinks are not resolved. (#1047)
• Mixed subtree processing can be used in morph_stats app via the use_subtrees flag. (#1034)
• neurom.view.[plot_tree|plot_tree3d|plot_soma|plot_soma3D] were hidden from the
  neurom.view module. They can still be imported from neurom.view.matplotlib_impl. (#1032)
• Mixed subtree processing. (#981)
• Deprecated modules and classes were removed. (#1026)

Please note that this will require updates to software using NeuroM as a library.
There is a migration guide here: https://neurom.readthedocs.io/en/stable/migration.html
In addition, one can bound NeuroM's version to be <4 before migrating.
Note, however, that all development will be on the "v4" code base going forward.

v3.2.11

What's Changed

• Fix mpl.cm.get_cmap deprecation by @eleftherioszisis in #1122

Full Changelog: v3.2.10...v3.2.11

v3.2.10

What's Changed

• Add check for overlapping points in neurites by @adrien-berchet in #1115

Full Changelog: v3.2.9...v3.2.10

v3.2.9

What's Changed

• Add back_tracking_segments() which is then called by is_back_tracking by @adrien-berchet in #1112
• Add has_no_back_tracking function by @adrien-berchet in #1113
• Make has_no_back_tracking() compatible with generate_annotation() by @adrien-berchet in #1114

Full Changelog: v3.2.8...v3.2.9

v3.2.8

What's Changed

• Replace pkg_resources with importlib in docs by @eleftherioszisis in #1104
• fix sdist so pypi upload can happen by @mgeplf in #1105
• github action: fix var name for sdist upload by @mgeplf in #1106
• fix location of readme, update links for badges and banner by @mgeplf in #1107

Full Changelog: v3.2.7...v3.2.8

v3.2.7

What's Changed

• update contributors to match git logs by @mgeplf in #1100
• do not use master for github actions by @mgeplf in #1101

Full Changelog: v3.2.6...v3.2.7