This repository contains all the notebooks of the hands-on sessions that will be held during the BrainOmics 2.0 course at the Human Technopole in Milan, Italy from November 18 to 22, 2024.
Day 1: Essential Workflow for single-cell RNASeq computational analysis
- WalkThrough
- Notebook 1: from count matrix to clusters
- Notebook 2: cluster characterization
- Resources
Day 2: Advanced approaches to single-cell RNA-seq data
- WalkThrough
- Notebook 1: additional processing and metacells
- Notebook 2: Imputation and Trajectory inference
- Notebook 3: Trajectory analysis
- Notebook 4: Transcription factor activity prediction
- Resources