Fix typos from recent update to v1.20.7

.typos.toml

@@ -26,10 +26,13 @@ FO = "FO"  # TODO: probably an abbreviation?
 sur = "sur"  # abbreviation for 'surrogate'
 nd = "nd"  # used as a variable name in sdoeAnalysisDialog
 astroid = "astroid"  # Python package name
+yhat = "yhat"  # used as a variable name in SurrogateParser
+iy = "iy"  # used as a variable name in SurrogateParser
 # proper nouns
 Gess = "Gess"
 # false positives
 strat = "strat"  # abbreviation of "strategy" used by Hypothesis
+arange = "arange"  # from numpy.arange function
 
 [default.extend-identifiers]
 # false positives

foqus_lib/framework/graph/graph.py

@@ -660,7 +660,7 @@ def solveListValTurbine(self, valueList=None, maxSend=20, sid=None, jobIds=[]):
             one time, for a large number of jobs the amount of input
             can get to large for Turbine to receive all at once.
         sid = A turbine session ID to reconnect to.  If a previous
-            run was disconnected this will hook back up and contiune
+            run was disconnected this will hook back up and continue
             to receive results until the session is done.
         """
         ######
@@ -2045,9 +2045,9 @@ def sccOrderCalc(self, sccNodes, ie, oe):
         done = False
         for i in range(len(sccNodes)):
             for j in range(len(sccNodes)):
-                for ine in ie[i]:
-                    for oute in oe[j]:
-                        if ine == oute:
+                for in_edge in ie[i]:
+                    for out_edge in oe[j]:
+                        if in_edge == out_edge:
                             adjlist[j].append(i)
                             adjlistR[i].append(j)
                             done = True

foqus_lib/framework/sdoe/irsf.py

@@ -195,11 +195,11 @@ def update_pareto_front(
 
     cond1 = (
         np.multiply(g1, ge2) + np.multiply(g2, ge1)
-    ) == 0  # PN: should be able to simplify this
+    ) == 0  # P.N.: should be able to simplify this
     cond1 = cond1.flatten()
     cond2 = np.sum(
         np.multiply(l1, le2) + np.multiply(l2, le1) + np.multiply(eq1, eq2)
-    )  # PN: and this
+    )  # P.N.: and this
 
     if np.any(cond1):
         n_desX = len(newdesX)

foqus_lib/framework/session/session.py

@@ -415,7 +415,7 @@ def save(
         updateCurrentFile == True: changes the current FOQUS session
             file to filename (only if filenale != None)
         changeLogMsg: A change log entry
-        confidence: Confidence in the qulity of the session
+        confidence: Confidence in the quality of the session
         bkp: save two files so you have a backup to keep tarck of
             all saved versions.
         """
@@ -862,7 +862,7 @@ def checkRecentlyOpenedFiles(self):
         self.recentlyOpenedFiles = files
         return files
 
-    def getRecentlyOpendFiles(self):
+    def getRecentlyOpenedFiles(self):
         """
         Just returns the list of files.  This is here in case
         we decide to add some validation step.

foqus_lib/framework/surrogate/ALAMO.py

@@ -847,11 +847,11 @@ def writeAlamoInputFile(
                 ignore.extend(np.array(val).flatten())
             af.write("ignore {0}\n".format(" ".join(map(str, ignore))))
             # TOLMEANERROR
-            tme = []
+            tolmeanerror = []
             for x in self.output:
                 val = self.getOutputVarOption("TOLMEANERROR", x)
-                tme.extend(np.array(val).flatten())
-            af.write("tolmeanerror {0}\n".format(" ".join(map(str, tme))))
+                tolmeanerror.extend(np.array(val).flatten())
+            af.write("tolmeanerror {0}\n".format(" ".join(map(str, tolmeanerror))))
             # TOLRELMETRIC
             trm = []
             for x in self.output:

foqus_lib/framework/surrogate/surrogate.py

@@ -262,15 +262,15 @@ def terminate(self):
 
     def writePluginTop(self, method="Generic", comments=[], importLines=[]):
         """
-        Write the code for the top protion of a flowsheet plugin
+        Write the code for the top portion of a flowsheet plugin
         that does the standard imports and variable definitions in
         the class init.  Returns string.
         """
         lines = []  # Join lines into a string at end (it's faster)
         # The first comment is needed for FOQUS to identify file as
         # a Python flowsheet model plugin.
         lines.append("# FOQUS_PYMODEL_PLUGIN")
-        # Some comments just for users lookin into the file
+        # Some comments just for users looking into the file
         lines.append("#")
         lines.append("# {0} surrogate export".format(method))
         lines.append("# THIS FILE WAS AUTOMATICALLY GENERATED.")

foqus_lib/gui/main/mainWindow.py

@@ -1574,7 +1574,7 @@ def updateRecentlyOpened(self):
             self.dat.foqusSettings.addRecentlyOpenedFile(self.dat.currentFile)
         self.openRecentMainMenu.clear()
         self.openRecentAction = []
-        for i, f in enumerate(self.dat.foqusSettings.getRecentlyOpendFiles()):
+        for i, f in enumerate(self.dat.foqusSettings.getRecentlyOpenedFiles()):
             self.openRecentAction.append(QAction(f, self))
             self.openRecentAction[i].setIcon(QIcon())
             self.openRecentAction[i].triggered.connect(