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handle failed samples via filtering #147

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1 task
slsevilla opened this issue Mar 28, 2024 · 0 comments
Open
1 task

handle failed samples via filtering #147

slsevilla opened this issue Mar 28, 2024 · 0 comments

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@slsevilla
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** Description
Pipeline currently uses summary files created to determine if there is a sample failure. Instead will switch to filtering the tuple to allow for pipeline logging/resume to not be reliant on file generation

** Modules/Workflows affected

  • Fairy
slsevilla added a commit to slsevilla/phoenix that referenced this issue Mar 28, 2024
@slsevilla
refactor: change filtering for failed samples CDCgov#147
f0876a8
@slsevilla slsevilla mentioned this issue Mar 28, 2024
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8 tasks
slsevilla added a commit to slsevilla/phoenix that referenced this issue Mar 31, 2024
@slsevilla
refactor: handling errors, ica handling, filtering CDCgov#147 CDCgov#149
f131ab6
slsevilla added a commit to slsevilla/phoenix that referenced this issue Mar 31, 2024
@slsevilla
refactor: filtering strategy bbduk CDCgov#147
5221309
slsevilla added a commit to slsevilla/phoenix that referenced this issue Mar 31, 2024
@slsevilla
refactor: ica handling, filtering CDCgov#147 CDCgov#149
3c87d90
slsevilla added a commit to slsevilla/phoenix that referenced this issue Mar 31, 2024
@slsevilla
refactor: ica handling CDCgov#147
fccbc89
slsevilla added a commit to slsevilla/phoenix that referenced this issue Mar 31, 2024
@slsevilla
refactor: ica handling, filtering CDCgov#147 CDCgov#149
25a2ca6
slsevilla added a commit to slsevilla/phoenix that referenced this issue Apr 1, 2024
@slsevilla
refactor: fastqc ica handling, filtering CDCgov#147 CDCgov#149
1a6fa53
slsevilla added a commit to slsevilla/phoenix that referenced this issue Apr 4, 2024
@slsevilla
refactor: filtering CDCgov#147
3059e03
slsevilla added a commit to slsevilla/phoenix that referenced this issue Apr 4, 2024
@slsevilla
refactor: move filtering to workflow level CDCgov#147
7720ec4
slsevilla added a commit to slsevilla/phoenix that referenced this issue Apr 4, 2024
@slsevilla
refactor: phoenix wf filtering, ica CDCgov#147 CDCgov#149
5ab72ca
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Refactor pipeline filtering, create params flags for tools slsevilla/phoenix
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@slsevilla