add fits-unfiltered

coll-health-obj-analysis/config/os_queries.ssm.yml

@@ -21,6 +21,8 @@ outputs:
     class: FitsOutput
   fits-filtered: 
     class: FitsFilteredOutput
+  fits-unfiltered: 
+    class: FitsUnfilteredOutput
 
 queries:
   default:

coll-health-obj-analysis/fits_outputter.rb

@@ -57,7 +57,7 @@ def format_fits_output
       xml = Nokogiri::XML(File.read(fits_output)).remove_namespaces!
       xml.xpath('/fits/identification').each do |doc|
         stat = doc.xpath('@status').text
-        stat = 'NA' if stat.empty?
+        stat = 'TOOLS_AGREE' if stat.empty?
         c = doc.xpath('count(identity)')
         count = c > 1 ? "(#{c.to_i} identities)" : ''
         write "\t\tStatus: #{stat} #{count}"
@@ -146,3 +146,12 @@ def record_stat(stat)
     @interesting = true unless stat == 'UNKNOWN'
   end
 end
+
+# Invoke FITS, output unfiltered FITS XML
+class FitsUnfilteredOutput < FitsOutput
+  def format_fits_output
+    return unless File.exist?(fits_output)
+
+    puts File.read(fits_output)
+  end
+end

coll-health-obj-analysis/object_health_query.rb

@@ -109,10 +109,11 @@ def make_options(argv)
     end.parse(argv)
 
     # the default extractor does not pull file details... change the formatter if needed
-    if options[:fmt] == :default &&
-       (options[:output] == :files || options[:output] == :fits || options[:output] == :'fits-filtered')
-      options[:fmt] =
-        :files
+    if options[:fmt] == :default
+      case options[:output]
+      when :files, :fits, :'fits-filtered', :'fits-unfiltered'
+        options[:fmt] = :files
+      end
     end
     options
   end

coll-health-obj-analysis/sample/README.md

@@ -236,8 +236,7 @@ _Uses YAML v1.14.0 extension_
 
 ## Conversion program to turn YAML into JSON
 ```rb
-File.open('config/obj_schema.json', 'w') do |f|
-  f.write(
+File.open('config/obj_schema.json', 'w') do |f|  f.write(
     JSON.pretty_generate(
       YAML.safe_load(
         File.read('config/obj_schema.yml'),