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Isosurfacing_3 - add openVDB oracle in an example #8292

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Isosurfacing_3 - add openVDB oracle in an example #8292

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Commits on Nov 18, 2022

  1. Remove trailing whitespace

    @JulyCode
    JulyCode committed Nov 18, 2022
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Commits on Nov 20, 2022

  1. massaging examples and doc (work in progress)

    @palliez
    palliez committed Nov 20, 2022
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  2. massaging documentation (work in progress)

    @palliez
    palliez committed Nov 20, 2022
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  3. more massage on the doc. 

    some comments/todo for Julian, to discuss
    @palliez
    palliez committed Nov 20, 2022
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  4. second pass over examples

    @palliez
    palliez committed Nov 20, 2022
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Commits on Nov 21, 2022

  1. massaging documentation (first global pass)

    @palliez
    palliez committed Nov 21, 2022
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  2. massaging Isosurfacing examples 

    rename mesh offset to signed mesh offset
    @palliez
    palliez committed Nov 21, 2022
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  3. Isosurfacing: added figure cross

    @palliez
    palliez committed Nov 21, 2022
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Commits on Nov 23, 2022

  1. Move #include of license check file

    @afabri
    afabri committed Nov 23, 2022
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  2. backtick and whitespace

    @afabri
    afabri committed Nov 23, 2022
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  3. Add return 0 and whitespace

    @afabri
    afabri committed Nov 23, 2022
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  4. Use CGAL_PI and add dependencies file in the documentation

    @afabri
    afabri committed Nov 23, 2022
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  5. superficial doc fixes

    @afabri
    afabri committed Nov 23, 2022
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Commits on Nov 24, 2022

  1. typos

    @afabri
    afabri committed Nov 24, 2022
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Commits on Dec 3, 2022

  1. Improve reference manual

    @JulyCode
    JulyCode committed Dec 3, 2022
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  2. Separate gradients into more files

    @JulyCode
    JulyCode committed Dec 3, 2022
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Commits on Dec 8, 2022

  1. Document code

    @JulyCode
    JulyCode committed Dec 8, 2022
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  2. Fix include and some formulations

    @JulyCode
    JulyCode committed Dec 8, 2022
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  3. Replace iso(-|_)value with isovalue

    @JulyCode
    JulyCode committed Dec 8, 2022
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Commits on Dec 9, 2022

  1. Change zero vector to member

    @JulyCode
    JulyCode committed Dec 9, 2022
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Commits on Jan 6, 2023

  1. Remove .clang-format

    @MaelRL
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  2. Merge remote-tracking branch 'cgal/master' into gsoc2022-isosurface

    @MaelRL
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  3. 4 --> 2 spaces indentation and "typedef" --> "using"

    @MaelRL
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  4. Move most headers into include/CGAL/Isosurfacing_3

    @MaelRL
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Commits on Jan 9, 2023

  1. Doc improvements

    @MaelRL
    MaelRL committed Jan 9, 2023
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  2. Tiny examples / tests fixes

    @MaelRL
    MaelRL committed Jan 9, 2023
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  3. Remove pointless template from Zero_gradient

    @MaelRL
    MaelRL committed Jan 9, 2023
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  4. Fix links to CGAL::Null_vector

    @MaelRL
    MaelRL committed Jan 9, 2023
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  5. Fix comment (Manhattan distance is the L1 norm)

    @MaelRL
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  6. Fix comment

    @MaelRL
    MaelRL committed Jan 9, 2023
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  7. Remove shared pointers

    @MaelRL
    MaelRL committed Jan 9, 2023
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Commits on Jan 11, 2023

  1. Update year

    @MaelRL
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Commits on Jan 13, 2023

  1. Refactor Isosurfacing_3

    @MaelRL
    MaelRL committed Jan 13, 2023
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  2. Bump up CMake version

    @MaelRL
    MaelRL committed Jan 13, 2023
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  3. Misc small code fixes / improvements

    @MaelRL
    MaelRL committed Jan 13, 2023
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  4. Small doc fixes

    @MaelRL
    MaelRL committed Jan 13, 2023
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  5. Fix namespace

    @MaelRL
    MaelRL committed Jan 13, 2023
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Commits on Jan 14, 2023

  1. Concept fixes

    @MaelRL
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Commits on Jan 16, 2023

  1. Minor fixes

    @MaelRL
    MaelRL committed Jan 16, 2023
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  2. Clarify resize(array) to be specific to arrays (it also matched maps … 

    …and sets)
    @MaelRL
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Commits on Jan 17, 2023

  1. Minor fixes

    @MaelRL
    MaelRL committed Jan 17, 2023
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Commits on Jan 18, 2023

  1. Simplify traits class

    @MaelRL
    MaelRL committed Jan 18, 2023
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  2. Describe what concepts are for

    @MaelRL
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Commits on Jan 19, 2023

  1. Global pass on isosurfacing: ref and user manual, improve a bit consi… 

    …stency of terms.
    @palliez
    palliez committed Jan 19, 2023
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  2. Fix typo 

    (PR stowaway!)
    @MaelRL
    MaelRL committed Jan 19, 2023
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  3. Move \cgalrefines lower because \brief goes automatically above \cgal… 

    …refines
    @MaelRL
    MaelRL committed Jan 19, 2023
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  4. user manual: leave comments into []

    @palliez
    palliez committed Jan 19, 2023
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  5. Merge branch 'gsoc2022-isosurface' of github.com:JulyCode/cgal into g… 

    …soc2022-isosurface
    @palliez
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Commits on Jan 24, 2023

  1. Replace Explicit_Cartesian_grid_geometry with Implicit_cartesian_grid… 

    …_geometry
    @JulyCode
    JulyCode committed Jan 24, 2023
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  2. Fix MSVC conversion error

    @JulyCode
    JulyCode committed Jan 24, 2023
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Commits on Jan 27, 2023

  1. Revert "Replace Explicit_Cartesian_grid_geometry with Implicit_cartes… 

    …ian_grid_geometry"

This reverts commit bbd0255.

See discussion in initial commit:
CGAL@bbd0255
    @MaelRL
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Commits on Feb 6, 2023

  1. Remove whitespace

    @JulyCode @MaelRL
    JulyCode authored and MaelRL committed Feb 6, 2023
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  2. Doc fixes

    @MaelRL
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Commits on Feb 14, 2023

  1. Enhancements & fixes after Round1 review 

    https://cgal.geometryfactory.com/CGAL/Members/wiki/Features/Isosurfacing_3/1st_round
    @MaelRL
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Commits on Mar 14, 2023

  1. Fix Cartesian_grid_3 segfault

    @JulyCode
    JulyCode committed Mar 14, 2023
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Commits on Aug 8, 2023

  1. Start rework and testing

    @JulyCode
    JulyCode committed Aug 8, 2023
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Commits on Dec 20, 2023

  1. Fix tmc synchronization

    @JulyCode
    JulyCode committed Dec 20, 2023
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Commits on Dec 23, 2023

  1. Example implicit sphere

    @palliez
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  2. Merge branch 'gsoc2022-isosurface' of https://github.com/JulyCode/cgal … 

    …into gsoc2022-isosurface

# Conflicts:
#	Isosurfacing_3/examples/Isosurfacing_3/marching_cubes_implicit_sphere.cpp
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  3. example implicit sphere

    @palliez
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Commits on Dec 24, 2023

  1. multiple offsets (for the teaser)

    @palliez
    palliez committed Dec 24, 2023
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Commits on Dec 25, 2023

  1. replace bunny by tractor offset

    @palliez
    palliez committed Dec 25, 2023
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  2. description

    @palliez
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  3. user manual

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  4. user manual 

    description
    @palliez
    palliez committed Dec 25, 2023
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  5. added figure : output surface with boundaries

    @palliez
    palliez committed Dec 25, 2023
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  6. Figure MC vs DC

    @palliez
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  7. use CGAL timer instead of TBB

    @palliez
    palliez committed Dec 25, 2023
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  8. DC - iwp 

    updated figure
    @palliez
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  9. Few more minor changes to examples

    @palliez
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Commits on Jan 2, 2024

  1. Change Eigen matrix to use correct type

    @JulyCode
    JulyCode committed Jan 2, 2024
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  2. Cast literals to correct type

    @JulyCode
    JulyCode committed Jan 2, 2024
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  3. Use eigen wrapper

    @JulyCode
    JulyCode committed Jan 2, 2024
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  4. Remove unused imports

    @JulyCode
    JulyCode committed Jan 2, 2024
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  5. Small fixes in examples

    @JulyCode
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  6. Small doc change

    @JulyCode
    JulyCode committed Jan 2, 2024
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Commits on Jan 5, 2024

  1. Example DC on octree (still uses the octree wrapper)

    @palliez
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  2. Merge branch 'gsoc2022-isosurface' of https://github.com/JulyCode/cgal … 

    …into gsoc2022-isosurface

# Conflicts:
#	Isosurfacing_3/examples/Isosurfacing_3/dual_contouring_octree.cpp
    @palliez
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  3. added example that compares parallel with sequential MC

    @palliez
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  4. Example : Parallel vs sequential Marching cubes

    @palliez
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Commits on Jan 9, 2024

  1. Add remarks

    @MaelRL
    MaelRL committed Jan 9, 2024
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  2. Fix some compilation errors

    @MaelRL
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  3. Merge remote-tracking branch 'cgal/master' into gsoc2022-isosurface

    @MaelRL
    MaelRL committed Jan 9, 2024
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Commits on Jan 12, 2024

  1. example uses TBB

    @afabri
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  2. Polygon -> Triangle

    @afabri
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  3. tiny fixes in user manual

    @afabri
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Commits on Jan 14, 2024

  1. Change comments

    @JulyCode
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  2. Deduct GeomTraits template type

    @JulyCode
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Commits on Jan 15, 2024

  1. Revert "Deduct GeomTraits template type" 

    This reverts commit ca1c78b.
    @JulyCode
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  2. Revert "Change comments" 

    This reverts commit b9bbc93.
    @JulyCode
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  3. Unify input and make that output can be written simultaneously (for e… 

    …xample during the testsuite)
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  4. doxygen warnings

    @afabri
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  5. doxygen warnings

    @afabri
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  6. fix doc

    @MaelRL
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  7. Add missing citation

    @MaelRL
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  8. Fix dependencies and some backticks

    @afabri
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Commits on Jan 16, 2024

  1. polish and make the todos more readable

    @afabri
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  2. typo

    @afabri
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  3. typo: face -> cell

    @afabri
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  4. Update Isosurfacing_3/include/CGAL/Isosurfacing_3/internal/topologica… 

    …lly_correct_marching_cubes_functors.h
    @afabri
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  5. fix tests

    @afabri
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Commits on Jan 17, 2024

  1. Changes after R1 review

    @MaelRL
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Commits on Jan 23, 2024

  1. Fix inrimage example

    @JulyCode
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  2. Fix range requirements

    @MaelRL
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  3. Rework image from/to operators

    @MaelRL
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  4. Make implicit / explicit Cartesian domains inherit rather than aliases 

    + document the constructor
    @MaelRL
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  5. Misc minor doc / code fixes

    @MaelRL
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  6. Also rework the Octree domain to avoid aliases

    @MaelRL
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  7. Fix usages of 'th `th

    @MaelRL
    MaelRL committed Jan 23, 2024
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  8. Fix location of doc image

    @MaelRL
    MaelRL committed Jan 23, 2024
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  9. Change bounding box type 

    And other code improvements
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  10. Fix compilation after Eigen type changes

    @MaelRL
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  11. Don't compute placement if the cell is irrelevant

    @MaelRL
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  12. Misc minor changes

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Commits on Jan 25, 2024

  1. Misc minor changes

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Commits on Jan 31, 2024

  1. Normalize gradients produced by Finite_diff_gradient_3

    @MaelRL
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  2. Type-erase the point function in Finite_diff_gradients_3

    @MaelRL
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  3. Add default values for the parallel template parameter

    @MaelRL
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  4. Add a helper function to visualize a Cartesian_grid_3 object

    @MaelRL
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  5. Fix narrowing conversion error

    @MaelRL
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  6. Merge remote-tracking branch 'afabri/Kernel_23-squared_length-GF' int… 

    …o gsoc2022-isosurface
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Commits on Feb 6, 2024

  1. Precise comment

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  2. Misc minor changes

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Commits on Feb 23, 2024

  1. New version of Isosurfacing_3: 

    - Completely restructure the domain classes to separate what is
  spatial partitioning, and what is value/gradient field definition.
- Improve DC edge-isosurfacing intersection, factorize code
- Refactor DC implementation to make it easier to use new (better)
  oracles
- Add concepts for these oracles, and document their models
    @MaelRL
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  2. Rewrite examples to emphasis data type and not contouring method

    @MaelRL
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  3. Update doc (new concepts, examples)

    @MaelRL
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  4. Move Side_of_triangle_mesh's assertion to usage rather than construction

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  5. Add name parameter for Isosurfacing_3

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  6. Add missing backticks

    @MaelRL
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  7. Add missing header include

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  8. static_cast

    @afabri @MaelRL
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  9. change #includes in examples

    @afabri @MaelRL
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  10. Address some CI errors

    @afabri @MaelRL
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  11. Address some CI errors

    @afabri @MaelRL
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  12. quiet the CI

    @afabri @MaelRL
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  13. Allow resizing of the underlying data vector

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  14. Add some clamping

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  15. Fix Isosurfacing_3's Image_3 IO: ref to 'grid' in 'values' must be st… 

    …able
    @MaelRL
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  16. Minor doc fixes

    @MaelRL
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  17. Update examples following Image_3 IO changes

    @MaelRL
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  18. Hide warning message behind macro

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  19. Add two benchmarks for parallelism of implicit/image data

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  20. Homogenize \return, gets, returns, etc.

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  21. Add missing header include

    @MaelRL
    MaelRL committed Feb 23, 2024
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  22. Actually call MC

    @MaelRL
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  23. Adjust input validity checks

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  24. Add an undocumented example to compare MC and TMC

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  25. Make DC Octree work (again)

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  26. Follow the OG paper's prescription of the SVD threshold 

    It makes it less likely to have wild stuff happens on spiky geometry
    @MaelRL
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  27. Misc minor changes

    @MaelRL
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  28. Fix some warnings

    @MaelRL
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  29. Simplify dichotomy + add proper error check

    @MaelRL
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  30. Use unordered maps

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Commits on Feb 24, 2024

  1. Update benchmarks

    @MaelRL
    MaelRL committed Feb 24, 2024
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  2. Remove obsolete files

    @MaelRL
    MaelRL committed Feb 24, 2024
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  3. Minor API update for Cartesian_grid_3

    @MaelRL
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  4. Doc improvements

    @MaelRL
    MaelRL committed Feb 24, 2024
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  5. Fix compilation of benchmarks, remove obsolete includes

    @MaelRL
    MaelRL committed Feb 24, 2024
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  6. Fix bitset checks and type consistency

    @MaelRL
    MaelRL committed Feb 24, 2024
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  7. Minor doc change

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  8. Use traits functors, not CGAL object class member functions

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Commits on Feb 25, 2024

  1. Silence warnings

    @MaelRL
    MaelRL committed Feb 25, 2024
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  2. Benchmarks fixes

    @MaelRL
    MaelRL committed Feb 25, 2024
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Commits on Feb 26, 2024

  1. Add point caching

    @MaelRL
    MaelRL committed Feb 26, 2024
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  2. Tiny iostream change

    @MaelRL
    MaelRL committed Feb 26, 2024
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  3. Remove accidental (and pointless) usages of NPs meant for DC in MC

    @MaelRL
    MaelRL committed Feb 26, 2024
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  4. Remove tmp code

    @MaelRL
    MaelRL committed Feb 26, 2024
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  5. Use a hash map in TBB-less Marching Cubes

    @MaelRL
    MaelRL committed Feb 26, 2024
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  6. Fix creating isolated vertices in MC

    @MaelRL
    MaelRL committed Feb 26, 2024
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  7. Use the free functions to construct domains in the most basic examples

    @MaelRL
    MaelRL committed Feb 26, 2024
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  8. Add missing function in IsosurfacingDomain_3 concept

    @MaelRL
    MaelRL committed Feb 26, 2024
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  9. Remove useless parameter simplify API call

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    MaelRL committed Feb 26, 2024
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Commits on Feb 27, 2024

  1. Make some minor hardcoded value parameters

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  2. Tests for Isosurfacing_3

    @MaelRL
    MaelRL committed Feb 27, 2024
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  3. Fix template parameter of specialization + const correctness

    @MaelRL
    MaelRL committed Feb 27, 2024
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  4. Use a more generic API to tolerate ranges of arrays

    @MaelRL
    MaelRL committed Feb 27, 2024
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  5. Revert "Follow the OG paper's prescription of the SVD threshold" 

    This reverts commit 913f879.

While a larger epsilon bound gave better results for non-manifold
pinched configurations, it also resulted in a lot of sharpness
loss.

For now, I'd rather it does not do well at non-manifold configurations.

Improving results on those configurations is todo.
    @MaelRL
    MaelRL committed Feb 27, 2024
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  6. Misc minor changes

    @MaelRL
    MaelRL committed Feb 27, 2024
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  7. Fix example name

    @MaelRL
    MaelRL committed Feb 27, 2024
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  8. Tiny CMakeLists fix

    @MaelRL
    MaelRL committed Feb 27, 2024
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  9. Fix typo (tparam > param)

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    MaelRL committed Feb 27, 2024
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Commits on Feb 28, 2024

  1. Work on user manual

    @MaelRL
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  2. Add missing header includes

    @MaelRL
    MaelRL committed Feb 28, 2024
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  3. Minor benchmark tweak

    @MaelRL
    MaelRL committed Feb 28, 2024
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  4. Add a comment

    @MaelRL
    MaelRL committed Feb 28, 2024
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Commits on Feb 29, 2024

  1. Add 'Isosurfacing' to some concept names

    @MaelRL
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  2. Add some assertions to ensure that arrays of correct size are used in MC

    @MaelRL
    MaelRL committed Feb 29, 2024
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  3. Do not provide a default value for finite difference-based gradients 

    Since there is no domain being passed, a hardcoded default has
no reason to be a good choice.
    @MaelRL
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  4. Clean CMakeLists.txt

    @MaelRL
    MaelRL committed Feb 29, 2024
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  5. Avoid computing points when the cell is trivial

    @MaelRL
    MaelRL committed Feb 29, 2024
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  6. Fix output filename

    @MaelRL
    MaelRL committed Feb 29, 2024
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  7. use lower case for partition traits descriptors

    @MaelRL
    MaelRL committed Feb 29, 2024
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  8. Improve doc phrasing

    @MaelRL
    MaelRL committed Feb 29, 2024
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  9. Rename image example 

    Preparation for VTK example
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Commits on Mar 1, 2024

  1. Add an example with VTK images

    @MaelRL
    MaelRL committed Mar 1, 2024
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  2. Update user manual

    @MaelRL
    MaelRL committed Mar 1, 2024
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  3. Use an array instead of a fixed size vector

    @MaelRL
    MaelRL committed Mar 1, 2024
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Commits on Mar 5, 2024

  1. Fix VC++ max

    @afabri @MaelRL
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  2. Add more VTK readers for the VTK image example

    @MaelRL
    MaelRL committed Mar 5, 2024
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  3. Use a more interesting implicit function in the DC example

    @MaelRL
    MaelRL committed Mar 5, 2024
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  4. Minor fixes for the implicit function example

    @MaelRL
    MaelRL committed Mar 5, 2024
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  5. Update copyright

    @MaelRL
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  6. use raw string

    @sloriot @MaelRL
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  7. Doc improvements

    @MaelRL
    MaelRL committed Mar 5, 2024
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  8. Add missing image

    @MaelRL
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  9. Minor doc fixes

    @MaelRL
    MaelRL committed Mar 5, 2024
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  10. Update dependencies

    @MaelRL
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  11. fix doc warnings

    @sloriot
    sloriot committed Mar 5, 2024
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  12. Remove obsolete code

    @MaelRL
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  13. Always use Parallel_if_available_tag in examples

    @MaelRL
    MaelRL committed Mar 5, 2024
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  14. Fix warning

    @MaelRL
    MaelRL committed Mar 5, 2024
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  15. use size_t instead of int for max range values

    @sloriot
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Commits on Mar 14, 2024

  1. Fix using the mesh point when the SotM is built from a tree

    @MaelRL
    MaelRL committed Mar 14, 2024
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Commits on Mar 21, 2024

  1. fix warnings

    @sloriot
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Commits on Mar 22, 2024

  1. int -> std::size_t to avoid warning

    @afabri
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  2. Fix double "Figure" in doc

    @MaelRL
    MaelRL committed Mar 22, 2024
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  3. Fixes after review

    @MaelRL
    MaelRL committed Mar 22, 2024
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Commits on Mar 25, 2024

  1. Implement convenience function

    @MaelRL
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  2. Safeguard against division by zero

    @MaelRL
    MaelRL committed Mar 25, 2024
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  3. Add some documentation about "compute_discrete_gradients()"

    @MaelRL
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Commits on Mar 27, 2024

  1. Fix unused variable warnings by disabling not-yet-implemented function

    @MaelRL
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  2. Try to fix "no declaration" error

    @MaelRL
    MaelRL committed Mar 27, 2024
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  3. added vtk image

    @ange-clement @sloriot
    ange-clement authored and sloriot committed Mar 27, 2024
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  4. Merge remote-tracking branch 'cgal/master' into HEAD

    @sloriot
    sloriot committed Mar 27, 2024
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Commits on Mar 28, 2024

  1. add missing const

    @sloriot
    sloriot committed Mar 28, 2024
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  2. update polyline writing functions

    @sloriot
    sloriot committed Mar 28, 2024
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  3. add missing requirement

    @sloriot
    sloriot committed Mar 28, 2024
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  4. accomodate API changes in the Orthtree package

    @sloriot
    sloriot committed Mar 28, 2024
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  5. replace auto with type

    @sloriot
    sloriot committed Mar 28, 2024
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  6. hide unused function

    @sloriot
    sloriot committed Mar 28, 2024
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  7. move examples using undocumented features to test

    @sloriot
    sloriot committed Mar 28, 2024
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  8. Add space

    @MaelRL @sloriot
    MaelRL authored and sloriot committed Mar 28, 2024
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  9. fixed warning

    @soesau
    soesau committed Mar 28, 2024
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  10. update deps

    @sloriot
    sloriot committed Mar 28, 2024
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  11. remove example that is now in test

    @sloriot
    sloriot committed Mar 28, 2024
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Commits on Mar 29, 2024

  1. workaround non-matching with Apple-clang

    @sloriot
    sloriot committed Mar 29, 2024
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Commits on Apr 3, 2024

  1. typos

    @afabri
    afabri committed Apr 3, 2024
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  2. Update 120 px thumbnail

    @MaelRL
    MaelRL committed Apr 3, 2024
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Commits on Apr 4, 2024

  1. Rename Grid-Image_3 conversion functions

    @MaelRL
    MaelRL committed Apr 4, 2024
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  2. Fix refinement of low level concepts

    @MaelRL
    MaelRL committed Apr 4, 2024
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  3. Misc doc fixes

    @MaelRL
    MaelRL committed Apr 4, 2024
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  4. Add some debugging verbose

    @MaelRL
    MaelRL committed Apr 4, 2024
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Commits on Jun 14, 2024

  1. add OpenVDB partition for Marching cubes, in an example

    @janetournois
    janetournois committed Jun 14, 2024
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  2. test with and without TCM

    @janetournois
    janetournois committed Jun 14, 2024
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Commits on Jun 17, 2024

  1. link with Eigen

    @janetournois
    janetournois committed Jun 17, 2024
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  2. wip dual contouring for openvdb

    @janetournois
    janetournois committed Jun 17, 2024
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Commits on Jun 18, 2024

  1. fix partition traits

    @janetournois
    janetournois committed Jun 18, 2024
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Commits on Jun 19, 2024

  1. Fix "for_each_vertex" functor

    @MaelRL
    MaelRL committed Jun 19, 2024
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  2. Interplate the value field instead of using a voxel-constant field

    @MaelRL
    MaelRL committed Jun 19, 2024
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  3. Misc minor changes

    @MaelRL
    MaelRL committed Jun 19, 2024
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