mark_cortical_sites_matlab

GUI used to manually mark cortical sites on brain meshes created using img_pipe.

Installation

git clone https://github.com/ChangLabUcsf/mark_cortical_sites_matlab.git

In startup.m add:

addpath(genpath('path/to/mark_cortical_sites_matlab'));

You may need to create startup.m if you do not already have one. Put it in the default MATLAB dir (probably ~/Documents/MATLAB/).

Usage

It is recommended that you mount one of the servers and use that as your mesh source (see wiki)

In MATLAB:

mark_stimulation_sites('EC61','rh','path/to/server_mount/data_store2/imaging/subjects/');

Select the type of reponse, select the region of brain you wish to mark, and press "mark." When you are done, press "save." Then, if you wish to warp, follow this notebook.

Authors

Ben Dichter

Jonathan Breshear