DEPLOYMENT.md

Steps

When all tests done and successful and PR is approved by codeowners, follow these steps:

1. Ensure that you update the version in microSALT/__init__.py
2. Select "Squash and merge" to merge branch into default branch (master).
3. Deploy master to stage:
   1. Log in to appropriate server ssh <server.scilifelab.se>
   2. us
   3. Install microSALT using one of the following commands
      1. If you have updated the environment.yml:

         sudo -iu hiseq.clinical
         us
         bash /home/proj/production/servers/resources/hasta.scilifelab.se/install-microsalt-stage.sh master

      2. Otherwise run:

         bash /home/proj/production/servers/resources/hasta.scilifelab.se/update-tool-stage.sh -e S_microSALT -t microSALT -b master

   4. Make sure that the installation was successful
4. Deploy master to production:
   1. Log in to appropriate server ssh <server.scilifelab.se>
   2. up
   3. Install microSALT using one of the following commands
      1. If you have updated the environment.yml:

         sudo -iu hiseq.clinical
         up
         bash /home/proj/production/servers/resources/hasta.scilifelab.se/install-microsalt-prod.sh

      2. Otherwise run:

         bash /home/proj/production/servers/resources/hasta.scilifelab.se/update-tool-prod.sh -e P_microSALT -t microSALT -b master

   4. Make sure that the installation was successful