Merge branch 'main' into custom_show_cases

CHANGELOG.md

@@ -27,6 +27,7 @@ About changelog [here](https://keepachangelog.com/en/1.0.0/)
 - Rename `Clinical significanc` to `Germline classification` in ClinVar submissions exported files
 - Rename `Comment on clinical significance` to `Comment on classification` in ClinVar submissions exported files
 - Show matching partial causatives on variant page
+- Matching causatives shown on case page consisting only of variant matching the default panels of the case - bug introduced since scout v4.72 (Oct 18, 2023)
 
 ## [4.76]
 ### Added

scout/adapter/mongo/variant.py

@@ -569,7 +569,7 @@ def case_matching_causatives(self, case_obj, limit_genes=None):
                 0:4
             ]  # example: [ "17", "7577559", "G" "A"]
 
-            for variant_type in ["clinical", "reseach"]:
+            for variant_type in ["clinical", "research"]:
                 positional_variant_ids.add(generate_md5_key(other_var_simple + [variant_type]))
 
         return self.match_affected_gt(case_obj, positional_variant_ids, limit_genes)

scout/server/blueprints/cases/controllers.py

@@ -1397,13 +1397,7 @@ def _matching_causatives(
                 The subset of all secondary findings found in default gene panels
         )
     """
-    matching_causatives_filter = list(
-        set(other_causatives_filter + other_causatives_in_default_panels_filter)
-    )
-
-    matching_causatives = store.case_matching_causatives(
-        case_obj=case_obj, limit_genes=matching_causatives_filter
-    )
+    matching_causatives = store.case_matching_causatives(case_obj=case_obj)
 
     other_causatives = []
     other_causatives_in_default_panels = []