Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Fix #4442 - do not bring in ORPHA inheritance model to OMIM specific … #4443

Merged
merged 18 commits into from
Feb 20, 2024
Merged

Fix #4442 - do not bring in ORPHA inheritance model to OMIM specific … #4443

merged 18 commits into from
Feb 20, 2024

Commits on Feb 20, 2024

  1. Fix #4442 - do not bring in ORPHA inheritance model to OMIM specific … 

    …fields
    @dnil
    dnil committed Feb 20, 2024
    Configuration menu
    Copy the full SHA
    1aa91a7 View commit details
    Browse the repository at this point in the history

  2. Fix vulture comment - add some type-hints.

    @dnil
    dnil committed Feb 20, 2024
    Configuration menu
    Copy the full SHA
    f80143a View commit details
    Browse the repository at this point in the history

  3. indent..

    @dnil
    dnil committed Feb 20, 2024
    Configuration menu
    Copy the full SHA
    faf2b78 View commit details
    Browse the repository at this point in the history

  4. Reduce complexity locally by moving this to a separate function with … 

    …docstring
    @dnil
    dnil committed Feb 20, 2024
    Configuration menu
    Copy the full SHA
    319ea5f View commit details
    Browse the repository at this point in the history

  5. wrap a few complex loops in functions

    @dnil
    dnil committed Feb 20, 2024
    Configuration menu
    Copy the full SHA
    6230aba View commit details
    Browse the repository at this point in the history

  6. Unused import

    @dnil
    dnil committed Feb 20, 2024
    Configuration menu
    Copy the full SHA
    cdf80ce View commit details
    Browse the repository at this point in the history

  7. rename function

    @dnil
    dnil committed Feb 20, 2024
    Configuration menu
    Copy the full SHA
    32ebd65 View commit details
    Browse the repository at this point in the history

  8. Hubris moving local functions out to reduce sonarcloud complexity gue… 

    …sstimate
    @dnil
    dnil committed Feb 20, 2024
    Configuration menu
    Copy the full SHA
    e8b5f0f View commit details
    Browse the repository at this point in the history

  9. speed up by not fetching institute for each gene

    @dnil
    dnil committed Feb 20, 2024
    Configuration menu
    Copy the full SHA
    05b0497 View commit details
    Browse the repository at this point in the history

  10. initialise dict

    @dnil
    dnil committed Feb 20, 2024
    Configuration menu
    Copy the full SHA
    272fe8b View commit details
    Browse the repository at this point in the history

  11. variant controller as well, and clarify sets

    @dnil
    dnil committed Feb 20, 2024
    Configuration menu
    Copy the full SHA
    9854b51 View commit details
    Browse the repository at this point in the history

  12. and the projection

    @dnil
    dnil committed Feb 20, 2024
    Configuration menu
    Copy the full SHA
    6498bf8 View commit details
    Browse the repository at this point in the history

  13. Update scout/server/blueprints/variant/utils.py 

    Co-authored-by: Chiara Rasi <rasi.chiara@gmail.com>
    @dnil @northwestwitch
    dnil and northwestwitch authored Feb 20, 2024
    Configuration menu
    Copy the full SHA
    0ffc42a View commit details
    Browse the repository at this point in the history

  14. Update scout/server/blueprints/variant/utils.py 

    Co-authored-by: Chiara Rasi <rasi.chiara@gmail.com>
    @dnil @northwestwitch
    dnil and northwestwitch authored Feb 20, 2024
    Configuration menu
    Copy the full SHA
    5eaba0a View commit details
    Browse the repository at this point in the history

  15. Update scout/server/blueprints/variant/utils.py 

    Co-authored-by: Chiara Rasi <rasi.chiara@gmail.com>
    @dnil @northwestwitch
    dnil and northwestwitch authored Feb 20, 2024
    Configuration menu
    Copy the full SHA
    5c6fe81 View commit details
    Browse the repository at this point in the history

  16. Clarify tooltip - thanks!

    @dnil
    dnil committed Feb 20, 2024
    Configuration menu
    Copy the full SHA
    a17ab87 View commit details
    Browse the repository at this point in the history

  17. Update scout/server/blueprints/variant/utils.py 

    Co-authored-by: Chiara Rasi <rasi.chiara@gmail.com>
    @dnil @northwestwitch
    dnil and northwestwitch authored Feb 20, 2024
    Configuration menu
    Copy the full SHA
    e9bc2b6 View commit details
    Browse the repository at this point in the history

  18. Update scout/server/blueprints/variant/utils.py 

    Co-authored-by: Chiara Rasi <rasi.chiara@gmail.com>
    @dnil @northwestwitch
    dnil and northwestwitch authored Feb 20, 2024
    Configuration menu
    Copy the full SHA
    1f79444 View commit details
    Browse the repository at this point in the history