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Version 4.89 #4867
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Codecov ReportAttention: Patch coverage is
Additional details and impacted files@@ Coverage Diff @@
## main #4867 +/- ##
=======================================
Coverage 84.80% 84.80%
=======================================
Files 319 319
Lines 19314 19314
=======================================
Hits 16379 16379
Misses 2935 2935 ☔ View full report in Codecov by Sentry. |
Quality Gate passedIssues Measures |
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This PR marks a new Scout release. We apply semantic versioning. This is a minor release since it adds new features in a backwards compatible manner.
[4.89]
Added
USERS_ACTIVITY_LOG_PATH
parameter in app configMean MT coverage
,Mean chrom 14 coverage
andEstimated mtDNA copy number
on MT coverage file from chanjo2 if availableChanged
Fixed
admin-guide/login-system.md
andadmin-guide/setup-scout.md
files)Testing on cg-vm1 server (Clinical Genomics Stockholm)
Prepare for testing
scout-stage
and the server iscg-vm1
.ssh <USER.NAME>@cg-vm1.scilifelab.se
sudo -iu hiseq.clinical
ssh localhost
podman ps
systemctl --user stop scout.target
systemctl --user start scout@<this_branch>
systemctl --user status scout.target
scout-stage
) to be used for testing by other users.Testing on hasta server (Clinical Genomics Stockholm)
Prepare for testing
ssh <USER.NAME>@hasta.scilifelab.se
us; paxa -u <user> -s hasta -r scout-stage
. You can also use the WSGI Pax app available at https://pax.scilifelab.se/.conda activate S_scout; pip freeze | grep scout-browser
bash /home/proj/production/servers/resources/hasta.scilifelab.se/update-tool-stage.sh -e S_scout -t scout -b <this_branch>
us; scout --version
paxa
procedure, which will release the allocated resource (scout-stage
) to be used for testing by other users.How to test:
Expected outcome:
The functionality should be working
Take a screenshot and attach or copy/paste the output.
Review: