Add MANE badges to the long list of transcripts on variant page

[northwestwitch]

This PR adds a functionality or fixes a bug.

• Closes MANE for SVs #5004 --> I have reasoned that it is better to add MANE tags down in the transcripts table because a SV variant can have many genes and we don't want the variant page swamped with refseq transcritps, which will happen if we introduce the RefSeq transcripts panel as we have on SNV variant page

Testing on cg-vm1 server (Clinical Genomics Stockholm)

Prepare for testing

1. Make sure the PR is pushed and available on Docker Hub
2. Fist book your testing time using the Pax software available at https://pax.scilifelab.se/. The resource you are going to call dibs on is scout-stage and the server is cg-vm1.
3. ssh <USER.NAME>@cg-vm1.scilifelab.se
4. sudo -iu hiseq.clinical
5. ssh localhost
6. (optional) Find out which scout branch is currently deployed on cg-vm1: podman ps
7. Stop the service with current deployed branch: systemctl --user stop scout.target
8. Start the scout service with the branch to test: systemctl --user start scout@<this_branch>
9. Make sure the branch is deployed: systemctl --user status scout.target
10. After testing is done, repeat procedure at https://pax.scilifelab.se/, which will release the allocated resource (scout-stage) to be used for testing by other users.

Testing on hasta server (Clinical Genomics Stockholm)

Prepare for testing

1. ssh <USER.NAME>@hasta.scilifelab.se
2. Book your testing time using the Pax software. us; paxa -u <user> -s hasta -r scout-stage. You can also use the WSGI Pax app available at https://pax.scilifelab.se/.
3. (optional) Find out which scout branch is currently deployed on cg-vm1: conda activate S_scout; pip freeze | grep scout-browser
4. Deploy the branch to test: bash /home/proj/production/servers/resources/hasta.scilifelab.se/update-tool-stage.sh -e S_scout -t scout -b <this_branch>
5. Make sure the branch is deployed: us; scout --version
6. After testing is done, repeat the paxa procedure, which will release the allocated resource (scout-stage) to be used for testing by other users.

How to test:

1. Check out this variant from a demo case with build 38, both on main branch and this branch

Expected outcome:
The functionality should be working
Take a screenshot and attach or copy/paste the output.

Review:

• code approved by DN
• tests executed by CR

[codecov]

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 84.76%. Comparing base (e7a56e8) to head (93dbb90).
Report is 1 commits behind head on main.

Additional details and impacted files

@@           Coverage Diff           @@
##             main    #5009   +/-   ##
=======================================
  Coverage   84.76%   84.76%           
=======================================
  Files         320      320           
  Lines       19351    19353    +2     
=======================================
+ Hits        16402    16405    +3     
+ Misses       2949     2948    -1     

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[northwestwitch]

Main branch, where some content is displayed outside the page

This branch

[northwestwitch]

This fixes the content being displayed outside the page window

[dnil]

💯 Also nice fix for the table!

Next time we add it to a template, we might make a macro, but so far so good. 😁

[sonarcloud]

Quality Gate passed

Issues
0 New issues
0 Accepted issues

Measures
0 Security Hotspots
0.0% Coverage on New Code
0.0% Duplication on New Code

See analysis details on SonarQube Cloud