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v4.72.2 - patch it while you can

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@dnil dnil released this 24 Oct 13:46
· 1015 commits to main since this release
v4.72.2
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Learn about vigilant mode.

We have patched the problems that occurred with parsing the updated OMIM files in the 4.72 release, sped up and reduced the memory footprint for the case, caseS and disease_terms.

We also introduce a few small frontend changes; increasing the download limit for STR variants to the same number as other ones, parenthood check fails are more obvious in red, and large numbers with thin spaces don't split across lines so easily.

[4.72.2]

Changed

  • A gunicorn maxrequests parameter for Docker server image - default to 1200
  • STR export limit increased to 500, as for other variants
  • Prevent long number wrapping and use thin spaces for separation, as per standards from SI, NIST, IUPAC, BIPM.
  • Speed up case retrieval and lower memory use by projecting case queries
  • Make relatedness check fails stand out a little more to new users
  • Speed up case retrieval and lower memory use by projecting case queries
  • Speed up variant pages by projecting only the necessary keys in disease collection query

Fixed

  • Huge memory use caused by cases and variants pages pulling complete disease documents from DB
  • Do not include genes fetched from HPO terms when loading diseases
  • Consider the renamed fields Approved Symbol -> Approved Gene Symbol and Gene Symbols -> Gene/Locus And Other Related Symbols when parsing OMIM terms from genemap2.txt file
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