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chanjo2 integration, index updates, frontend and Fusion gene fixes
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@dnil dnil released this 27 Mar 12:29
· 272 commits to main since this release
v4.80
b23253a
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[4.80]

Added

  • Support for .d4 files coverage using chanjo2 (Case page sidebar link) with test
  • Link to chanjo2 coverage report and coverage gene overview on gene panel page
  • Link to chanjo2 coverage report on Case page, HPO dynamic gene list
  • Link to genes coverage overview report on Case page, HPO dynamic gene list

Changed

  • All links in disease table on diagnosis page now open in a new tab
  • Dark mode settings applied to multi-selects on institute settings page
  • Comments on case and variant pages can be viewed by expanding an accordion
  • On case page information on pinned variants and variants submitted to ClinVar are displayed in the same table
  • Demo case file paths are now stored as absolute paths
  • Optimised indices to address slow queries
  • On case page default panels are now found at the top of the table, and it can be sorted by this trait

Fixed

  • On variants page, search for variants in genes present only in build 38 returning no results
  • Pin/unpin with API was not able to make event links
  • A new field Explanation for multiple conditions is available in ClinVar for submitting variants with more than one associated condition
  • Fusion genes with partners lacking gene HGNC id will still be fully loaded
  • Fusion variantS export now contains fusion variant specific columns
  • When Loqusdb observations count is one the table includes information on if observation was for the current or another case
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