You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Does exon skipping correspond to the subcategory "combination of known splice sites" under NIC?
EDIT: Follow up question, how is this subcategory different from "combination of known splice junctions?" As far as I can tell from the schematic, it's when the novel transcript has a combination of splice junctions from multiple reference isoforms. Whereas for the "known splice sites combination", it's splice sites from a single reference isoform. Is this interpretation right?
A more general question: How does SQANTI3 define a "splice junction" vs. a "splice site"?
reacted with thumbs up emoji reacted with thumbs down emoji reacted with laugh emoji reacted with hooray emoji reacted with confused emoji reacted with heart emoji reacted with rocket emoji reacted with eyes emoji
-
Does exon skipping correspond to the subcategory "combination of known splice sites" under NIC?
EDIT: Follow up question, how is this subcategory different from "combination of known splice junctions?" As far as I can tell from the schematic, it's when the novel transcript has a combination of splice junctions from multiple reference isoforms. Whereas for the "known splice sites combination", it's splice sites from a single reference isoform. Is this interpretation right?
A more general question: How does SQANTI3 define a "splice junction" vs. a "splice site"?
Thanks,
Sowmya
Beta Was this translation helpful? Give feedback.
All reactions