Discussions

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  GTF from BRAKER2 is not recognized as gtf format

  shin0727 asked Nov 6, 2024 in Q&A · Unanswered

  

  

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  gtfToGenePred error

  TheCatalyticMicroChip asked Oct 24, 2024 in Q&A · Unanswered

  

  

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  Can I calculate the percentage of transcript models with different ranges of sequence coverage by long reads

  YIGUIz asked Sep 26, 2024 in Q&A · Unanswered

  

  

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  Unique STAR run when running multiple chunks

  MartinezRuiz-Carlos asked Apr 24, 2024 in Ideas · Closed · Answered

  

  

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  IndexError: list index out of range when run QC

  yerry77 asked Sep 19, 2024 in Q&A · Closed · Answered

  

  

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  reference_classif.txt

  pawel-wojciechowski asked Apr 11, 2024 in Q&A · Answered

  

  

  

  

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  Some Rescue Results in SQANTI3 Not Comprehensible

  klenhart asked Sep 12, 2024 in General · Answered

  

  

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  Assign new transcripts to new loci

  francicco asked May 2, 2024 in General · Answered

  

  

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  How are fusions defined by SQANTI?

  tky199996 asked Apr 12, 2024 in Q&A · Answered

  

  

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  How should I handle these Isoforms Classification?

  bxZhang996 asked Sep 11, 2024 in Q&A · Answered

  

  

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  Clarification on strand-related categories in read-Level Analysis

  youyupei asked Aug 24, 2024 in Q&A · Unanswered

  

  

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  SQANTI3 rescue:object 'filter_result' not found

  MR-D-CJ asked Aug 19, 2024 in General · Unanswered

  

  

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  xxx found in FL count file but not in input fasta

  pgupta3005 asked Aug 6, 2024 in General · Unanswered

  

  

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  What's the difference between my own gtf data and the sqanti qc output (*_corrected.gtf)?

  dudududu12138 asked Jun 16, 2024 in Q&A · Unanswered

  

  

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  Question on exon skipping/casette exon

  sparthib asked Jun 14, 2024 in Q&A · Unanswered

  

  

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  Output gtf files

  sparthib asked Jun 12, 2024 in Q&A · Unanswered

  

  

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  Run SQANTI3 with annotated reference Genome but no annotated reference Transcriptome?

  KeSchus asked Jun 5, 2024 in Q&A · Unanswered

  

  

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  SQANTI3 for non-model organisms

  Maxim-Karpov asked May 22, 2024 in Q&A · Answered

  

  

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  Sqanti3 without reference annotation gtf or gff3

  bijendrabio asked May 16, 2024 in General · Answered

  

  

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  Rescue compatibility with Nanopore data

  MartinezRuiz-Carlos asked Apr 23, 2024 in Q&A · Answered

  

  

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  Single cell long read data analysis with SQANTI3

  vasikara17 asked Apr 16, 2024 in Q&A · Answered

  

  

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  illumna short reads

  question Further information is requested

  tky199996 asked Feb 29, 2024 in General · Answered

  

  

  

  

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  BAM/SAM input option

  apollo994 asked Mar 21, 2024 in Ideas · Answered

  

  

  

  

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  use failed

  JXAUDZF asked Mar 7, 2024 in General · Closed · Answered

  

  

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  Which mapper to use

  JXAUDZF asked Mar 7, 2024 in Q&A · Closed · Answered

  

  

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