Skip to content
@DataBiosphere

Data Biosphere

We are creating a vibrant ecosystem of interoperable modules and data environments for the biomedical community.

Popular repositories Loading

  1. toil toil Public

    A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.

    Python 894 241

  2. dsub dsub Public

    Open-source command-line tool to run batch computing tasks and workflows on backend services such as Google Cloud.

    Python 262 44

  3. terra-ui terra-ui Public

    Web user interface for the Terra platform

    TypeScript 52 21

  4. leonardo leonardo Public

    Notebook service

    Scala 44 21

  5. terra-docker terra-docker Public

    Jupyter Notebook 27 35

  6. job-manager job-manager Public

    Job Manager API and UI for interacting with asynchronous batch jobs and workflows.

    TypeScript 26 5

Repositories

Showing 10 of 159 repositories
  • jade-data-repo Public

    The Terra Data Repository built by the Jade team.

    DataBiosphere/jade-data-repo’s past year of commit activity
    Java 13 BSD-3-Clause 5 0 21 Updated Oct 1, 2024
  • terra-scientific-pipelines-service Public
    DataBiosphere/terra-scientific-pipelines-service’s past year of commit activity
    Java 0 BSD-3-Clause 0 0 4 Updated Oct 1, 2024
  • terra-ui Public

    Web user interface for the Terra platform

    DataBiosphere/terra-ui’s past year of commit activity
    TypeScript 52 BSD-3-Clause 21 145 18 Updated Oct 1, 2024
  • azul Public

    Metadata indexer and query service used for AnVIL, HCA, LungMAP, and CGP

    DataBiosphere/azul’s past year of commit activity
    Python 7 Apache-2.0 2 713 13 Updated Oct 1, 2024
  • terra-resource-buffer Public

    Terra Resource Buffering Service

    DataBiosphere/terra-resource-buffer’s past year of commit activity
    Java 4 BSD-3-Clause 2 0 2 Updated Oct 1, 2024
  • toil Public

    A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.

    DataBiosphere/toil’s past year of commit activity
    Python 894 Apache-2.0 241 392 (1 issue needs help) 19 Updated Oct 1, 2024
  • terra-billing-profile-manager Public
    DataBiosphere/terra-billing-profile-manager’s past year of commit activity
    Java 4 BSD-3-Clause 1 0 0 Updated Oct 1, 2024
  • consent-ontology Public

    Broad Institute Data Use Oversight System

    DataBiosphere/consent-ontology’s past year of commit activity
    Java 7 BSD-3-Clause 0 0 0 Updated Oct 1, 2024
  • stairway Public

    Stairway saga transaction processor library

    DataBiosphere/stairway’s past year of commit activity
    Java 2 BSD-3-Clause 1 0 1 Updated Oct 1, 2024
  • terra-common-lib Public
    DataBiosphere/terra-common-lib’s past year of commit activity
    Java 0 BSD-3-Clause 0 0 4 Updated Oct 1, 2024
View all repositories

Top languages

Loading…