Dockerfile

# Copyright 2017 Google Inc. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
#     http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.

FROM java:8
MAINTAINER Matt Bookman <mbookman@google.com>

# Download FASTQC unzip it and link it to /usr/bin
RUN wget http://www.bioinformatics.babraham.ac.uk/projects/fastqc/fastqc_v0.11.5.zip && \
  unzip fastqc_v0.11.5.zip && \
  chmod +x FastQC/fastqc && \
  cp -r FastQC /usr/share/ && \
  ln -s /usr/share/FastQC/fastqc /usr/bin/