quick fix for printer and fedex init masking #193
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name: BLOOM CENTOS | |
on: | |
push: | |
branches: | |
- 'main' | |
tags: | |
- '*' | |
pull_request: | |
branches: | |
- '**' | |
jobs: | |
centos-stream-job: | |
runs-on: ubuntu-latest # Host OS for the Docker container | |
container: | |
image: quay.io/centos/centos:stream9 # Using CentOS Stream 9 | |
steps: | |
- name: Check out repository | |
uses: actions/checkout@v4 | |
- name: Set up Python | |
run: | | |
dnf install -y python3 | |
python3 -m ensurepip | |
python3 -m pip install --upgrade pip | |
- name: Set up Miniconda | |
run: | | |
dnf install -y wget sudo | |
useradd -m bloom | |
ls -lta . | |
cat bloom_lims/env/install_postgres.sh | |
chmod -R a+wrx ./* | |
chown -R bloom:bloom ./* | |
cp -r ./* /home/bloom/ | |
chown -R bloom:bloom /home/bloom/* | |
ogpwd=$PWD | |
echo $PWD | |
echo GOGOGOGO | |
echo 'bloom ALL=(ALL) NOPASSWD:ALL' >> /etc/sudoers | |
# Create the setup script | |
cat <<'EOF' >setup_bloom.sh | |
#!/bin/bash | |
cd /home/bloom | |
wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh -O miniconda.sh | |
bash miniconda.sh -b -p /home/bloom/miniconda | |
export PATH="/home/bloom/miniconda/bin:$PATH" | |
conda init | |
pwd | |
export USER=bloom | |
source /home/bloom/.bashrc | |
conda env list | |
cd $ogpwd | |
ls -lta . | |
sleep 5 | |
echo $PWD | |
ls -lta ./ | |
sleep 10 | |
source bloom_lims/env/install_postgres.sh | |
pytest | |
EOF | |
# Make the script executable | |
chmod +x setup_bloom.sh | |
# Execute the script as the 'bloom' user | |
sudo -u bloom ./setup_bloom.sh |