align units throughout code #403
Workflow file for this run
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| name: pytest-py38-mindeps | |
| on: | |
| push: | |
| branches: [ main ] | |
| pull_request: | |
| branches: [ main ] | |
| # Allows you to run this workflow manually from the Actions tab | |
| workflow_dispatch: | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.8.14' #used at HMC | |
| - name: Set fixed versions in requirements.txt extracted from pyproject.toml | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install "toml-to-requirements==0.1.0" # highest version available to py38 | |
| toml-to-req --toml-file pyproject.toml --include-optional # --optional-lists dev # commented arg is available from toml-to-requirements 0.2.0, but that version is not available for py38. | |
| sed -i -E 's/>=/==/' requirements.txt | |
| # temporarily removing all non-dev optional requirements manually, can be done more cleanly with toml-to-req>=0.2.0 | |
| sed -i '/^sphinx/d' requirements.txt | |
| sed -i '/^nbsphinx/d' requirements.txt | |
| sed -i '/^pydata-sphinx-theme/d' requirements.txt | |
| sed -i '/^jupyter/d' requirements.txt | |
| sed -i '/^notebook/d' requirements.txt | |
| - name: Print contents of requirements.txt | |
| run: | | |
| # print file contents | |
| cat requirements.txt | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install -r requirements.txt | |
| # also install the package itself to enable subprocess to work properly (for cli) | |
| python -m pip install -e . | |
| - name: list env contents | |
| run: | | |
| conda info | |
| conda list | |
| pip list | |
| - name: Lint with flake8 | |
| run: | | |
| # stop the build if there are Python syntax errors or undefined names | |
| flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
| # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
| flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
| - name: Test with pytest | |
| run: | | |
| pytest -m "not acceptance" --cov=hatyan --cov-report xml --cov-report term |