Merge pull request #136 from Leengit/pypi_publish #332
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| name: Build, test, package | |
| on: [push,pull_request] | |
| jobs: | |
| test-python: | |
| runs-on: ubuntu-20.04 | |
| strategy: | |
| max-parallel: 2 | |
| matrix: | |
| python-version: ["3.8", "3.9", "3.10", "3.11"] | |
| include: | |
| - flake8-python-git-tag: "" | |
| - pooch-python-git-tag: "" | |
| - pytest-python-git-tag: "" | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: 'Free up disk space' | |
| run: | | |
| # Workaround for https://github.com/actions/virtual-environments/issues/709 | |
| df -h | |
| sudo apt-get clean | |
| sudo rm -rf "/usr/local/share/boost" | |
| sudo rm -rf "$AGENT_TOOLSDIRECTORY" | |
| df -h | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install Python dependencies | |
| run: | | |
| sudo apt update | |
| sudo apt install openslide-tools python3-openslide | |
| python -m pip install --upgrade pip setuptools wheel | |
| pip install 'flake8${{ matrix.flake8-python-git-tag }}' 'pooch${{ matrix.pooch-python-git-tag }}' 'pytest${{ matrix.pytest-python-git-tag }}' | |
| pip install 'large-image[bioformats,ometiff,openjpeg,openslide,tiff]' 'scikit_image' --find-links https://girder.github.io/large_image_wheels | |
| - name: Install histomics_stream | |
| run: | | |
| pip install .[tensorflow,torch,zarr] | |
| # With Python 3.8, tensorflow downgrades typing-extensions, which appears to | |
| # be unnecessary and breaks a dependency of large_image, so we overrule that | |
| # next. | |
| pip install --upgrade typing-extensions | |
| - name: Lint with flake8 | |
| run: | | |
| # stop the build if there are Python syntax errors or undefined names | |
| flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
| # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
| flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
| - name: Test with pytest | |
| run: | | |
| cd test | |
| pytest | |
| shell: bash | |
| build-n-publish: | |
| name: Build and publish Python 🐍 distributions 📦 to PyPI | |
| runs-on: ubuntu-20.04 | |
| steps: | |
| - uses: actions/checkout@master | |
| - name: Set up Python "3.9" | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.9" | |
| - name: Install pypa/build | |
| run: >- | |
| python -m pip install build --user | |
| - name: Build a binary wheel and a source tarball | |
| run: >- | |
| python -m build --sdist --wheel --outdir dist/ . | |
| - name: Publish to Test PyPI | |
| if: github.event.repository.fork == false | |
| uses: pypa/gh-action-pypi-publish@release/v1 | |
| with: | |
| password: ${{ secrets.TEST_PYPI_API_TOKEN }} | |
| repository-url: https://test.pypi.org/legacy/ | |
| skip-existing: true | |
| - name: Publish distribution 📦 to PyPI | |
| if: github.event_name == 'push' && startsWith(github.event.ref, 'refs/tags') | |
| uses: pypa/gh-action-pypi-publish@release/v1 | |
| with: | |
| password: ${{ secrets.PYPI_API_TOKEN }} |